Alternatives and similar repositories for BGC-Prophet

Users that are interested in BGC-Prophet are comparing it to the libraries listed below

• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆85Updated 3 months ago
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆153Updated last year
• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆35Updated 11 months ago
• EngqvistLab / Tome
  A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
  ☆58Updated 4 years ago
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆151Updated 9 months ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆94Updated 7 months ago
• MiguelMSandin / SSNetworks
  A brief, quick and dirty introduction to Sequence Similarity Networks
  ☆22Updated 2 years ago
• soedinglab / spacedust
  Discovery of conserved gene clusters in multiple genomes
  ☆84Updated 4 months ago
• Merck / bgc-pipeline
  ☆11Updated 9 months ago
• barricklab / ostir
  Software for predicting translation initiation rates in bacteria
  ☆29Updated last month
• mayuefine / c_AMPs-prediction
  ☆84Updated 2 years ago
• bcgsc / AMPlify
  Attentive deep learning model for antimicrobial peptide prediction
  ☆51Updated 5 months ago
• Russel88 / CRISPRCasTyper
  CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
  ☆101Updated last year
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆38Updated 3 months ago
• LucaOne / LucaVirus
  LucaVirus: Modeling the Evolutionary and Functional Landscape of Viruses with a Unified Genome-Protein Language Model
  ☆43Updated 3 weeks ago
• steineggerlab / foldmason
  Multiple Protein Structure Alignment at Scale with FoldMason
  ☆187Updated this week
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆85Updated last month
• soedinglab / plass
  sensitive and precise assembly of short sequencing reads
  ☆161Updated 11 months ago
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆119Updated last year
• soedinglab / MMseqs
  ☆14Updated 8 years ago
• kellylab / viral-protein-function-plm
  Viral protein family functional prediction using protein language models
  ☆20Updated last year
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆39Updated last month
• rcedgar / reseek
  Protein structure alignment and search algorithm
  ☆70Updated this week
• allie-walker / Natural-product-function
  scripts for predicting natural product activity from biosynthetic gene cluster sequences
  ☆24Updated 3 months ago
• EddyRivasLab / infernal
  RNA secondary structure/sequence profiles for homology search and alignment
  ☆113Updated 10 months ago
• gbouras13 / phold
  Phage Annotation using Protein Structures
  ☆126Updated this week
• althonos / pyhmmer
  Cython bindings and Python interface to HMMER3.
  ☆148Updated last month
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆33Updated last year
• IndexThePlanet / Logan
  Logan Unitigs and Contigs
  ☆167Updated this week
• mdmparis / defense-finder
  Systematic search of all known anti-phage systems.
  ☆117Updated last week