HUST-NingKang-Lab / BGC-ProphetLinks
A deep learning approach that leverages language processing neural network model to accurately identify known BGCs and extrapolate novel ones.
☆12Updated last month
Alternatives and similar repositories for BGC-Prophet
Users that are interested in BGC-Prophet are comparing it to the libraries listed below
Sorting:
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆135Updated 7 months ago
- ☆11Updated 7 months ago
- Attentive deep learning model for antimicrobial peptide prediction☆49Updated 3 months ago
- UniProt Id Mapping through API☆34Updated 9 months ago
- snakemake pipeline for creating trees from sequence sets☆82Updated last month
- We developed a dual-channel model named LucaPCycle, based on the raw sequence and protein language large models, to predict whether a pro…☆23Updated 3 weeks ago
- BGC Detection and Classification Using Deep Learning☆146Updated last year
- Protein structure alignment and search algorithm☆63Updated last week
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆57Updated 4 years ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆113Updated 10 months ago
- Multi-class signal peptide prediction and structure decoding model.☆88Updated 5 months ago
- Software for predicting translation initiation rates in bacteria☆27Updated 7 months ago
- Discovery of conserved gene clusters in multiple genomes☆82Updated 2 months ago
- Genomic language model predicts protein co-regulation and function☆82Updated 3 months ago
- ☆8Updated 9 months ago
- Conservation analysis of homologous proteins with Python☆12Updated 4 years ago
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated last month
- ☆83Updated 2 years ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆37Updated last month
- Python framework for doing ancestral sequence reconstruction☆38Updated last year
- Cython bindings and Python interface to the MEME suite, a collection of tools for the analysis of sequence motifs.☆14Updated 2 months ago
- Transmembrane proteins predicted through Language Model embeddings☆37Updated 2 months ago
- A method to predict DNA shape features considering farther flanking region.☆33Updated 9 months ago
- Feature map and function annotation of Proteins☆33Updated last year
- A brief, quick and dirty introduction to Sequence Similarity Networks☆21Updated 2 years ago
- Cython bindings and Python interface to HMMER3.☆140Updated 3 weeks ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆55Updated 3 months ago
- Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.☆40Updated 3 weeks ago
- Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.☆32Updated last month
- Phage Annotation using Protein Structures☆109Updated 2 weeks ago