Alternatives and similar repositories for BGC-Prophet

Users that are interested in BGC-Prophet are comparing it to the libraries listed below

• iquasere / UPIMAPI
  UniProt Id Mapping through API
  ☆35Updated 2 weeks ago
• Merck / bgc-pipeline
  ☆11Updated 9 months ago
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆153Updated last year
• soedinglab / spacedust
  Discovery of conserved gene clusters in multiple genomes
  ☆97Updated 4 months ago
• DessimozLab / fold_tree
  snakemake pipeline for creating trees from sequence sets
  ☆86Updated 2 weeks ago
• bcgsc / AMPlify
  Attentive deep learning model for antimicrobial peptide prediction
  ☆52Updated 6 months ago
• PeterDeWeirdt / defense_predictor
  Python package to run DefensePredictor, a model that identifies proteins involved in anti-phage defense
  ☆10Updated this week
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆153Updated 10 months ago
• EngqvistLab / Tome
  A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
  ☆61Updated 5 years ago
• rcedgar / reseek
  Protein structure alignment and search algorithm
  ☆73Updated this week
• barricklab / ostir
  Software for predicting translation initiation rates in bacteria
  ☆29Updated 2 months ago
• kellylab / viral-protein-function-plm
  Viral protein family functional prediction using protein language models
  ☆20Updated last year
• gbouras13 / phold
  Phage Annotation using Protein Structures
  ☆128Updated 3 weeks ago
• Russel88 / CRISPRCasTyper
  CCTyper: Automatic detection and subtyping of CRISPR-Cas operons
  ☆101Updated last year
• medema-group / bigslice
  A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
  ☆86Updated last month
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆95Updated 8 months ago
• allie-walker / Natural-product-function
  scripts for predicting natural product activity from biosynthetic gene cluster sequences
  ☆24Updated 3 weeks ago
• LucaOne / LucaVirus
  LucaVirus: Modeling the Evolutionary and Functional Landscape of Viruses with a Unified Genome-Protein Language Model
  ☆46Updated 3 weeks ago
• MiguelMSandin / SSNetworks
  A brief, quick and dirty introduction to Sequence Similarity Networks
  ☆25Updated 2 years ago
• gem-pasteur / macsyfinder
  MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
  ☆64Updated this week
• LucaOne / LucaPCycle
  We developed a dual-channel model named LucaPCycle, based on the raw sequence and protein language large models, to predict whether a pro…
  ☆25Updated 3 weeks ago
• tlawrence3 / amPEPpy
  ☆28Updated last year
• IndexThePlanet / Logan
  Logan Unitigs and Contigs
  ☆171Updated 3 weeks ago
• cultivarium / GenomeSPOT
  Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome
  ☆56Updated 6 months ago
• soedinglab / plass
  sensitive and precise assembly of short sequencing reads
  ☆161Updated 11 months ago
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆120Updated last year
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆39Updated 2 months ago
• mdmparis / defense-finder
  Systematic search of all known anti-phage systems.
  ☆119Updated last week
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆38Updated 4 months ago
• nebiolabs / domainator
  A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.
  ☆21Updated 6 months ago