HUST-NingKang-Lab / BGC-ProphetView external linksLinks
A deep learning approach that leverages language processing neural network model to accurately identify known BGCs and extrapolate novel ones.
☆25Jan 9, 2026Updated last month
Alternatives and similar repositories for BGC-Prophet
Users that are interested in BGC-Prophet are comparing it to the libraries listed below
Sorting:
- Masked language models of biosynthetic gene clusters☆17Jul 27, 2022Updated 3 years ago
- PGPg_finder is a command-line tool that offers different workflows for genome and metagenome annotation of Plant-Growth Promotion Genes. …☆27Jan 20, 2026Updated 3 weeks ago
- BGC Detection and Classification Using Deep Learning☆156Nov 11, 2023Updated 2 years ago
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆17Jan 31, 2026Updated 2 weeks ago
- ☆17Jan 2, 2025Updated last year
- ☆12Dec 10, 2024Updated last year
- MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.☆46Jan 26, 2026Updated 2 weeks ago
- Discovery of conserved gene clusters in multiple genomes☆124Jan 16, 2026Updated 3 weeks ago
- Deep learning for Metagenome Assembly Error Detection☆25Nov 30, 2020Updated 5 years ago
- ☆28Aug 29, 2024Updated last year
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆24Sep 15, 2025Updated 4 months ago
- Calculate assocations between genes and traits☆29Mar 10, 2025Updated 11 months ago
- ☆25Jan 30, 2025Updated last year
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆28Jan 15, 2026Updated last month
- Sparse Cooccurence Network Investigation for Compositional data☆25Feb 1, 2026Updated last week
- Lint Nextflow pipelines in Python.☆11Jan 23, 2025Updated last year
- Official implementation of "Learning the language of protein structures"☆41Jun 20, 2025Updated 7 months ago
- Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…☆11May 8, 2024Updated last year
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆11Oct 11, 2022Updated 3 years ago
- protein embedding project☆12May 3, 2018Updated 7 years ago
- Python library for identification and masking of low-complexity regions in nucleotide sequences☆10Jan 23, 2026Updated 3 weeks ago
- Enjoy Soundcloud without the need for a Pro account.☆18Jan 16, 2019Updated 7 years ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆40Dec 10, 2025Updated 2 months ago
- mLDM: a new hierarchical Bayesian statistical model for sparse microbial association discovery☆11Oct 18, 2016Updated 9 years ago
- Query sequence database by HMMs arranged in predefined synteny structure☆13Nov 3, 2023Updated 2 years ago
- Ontology-aware neural network (ONN) for microbial community sample source tracking!☆10Oct 11, 2022Updated 3 years ago
- 一年过去了，你在华子食堂里花的钱都花在哪儿了？☆10Feb 7, 2025Updated last year
- ☆11Sep 27, 2024Updated last year
- This is for the AI enzyme design course☆13Nov 10, 2025Updated 3 months ago
- Implementations of the renormalization group-based diffusion model (RGDM).☆16Mar 10, 2025Updated 11 months ago
- ☆43Jun 11, 2025Updated 8 months ago
- Bilingual Language Model for Protein Sequence and Structure☆297Jan 2, 2025Updated last year
- Generating graph structures from OWL ontologies☆12Nov 21, 2017Updated 8 years ago
- trach-cli integration for xplr☆11Jul 31, 2023Updated 2 years ago
- Config for my MoErgo Glove80 keyboard☆14Feb 7, 2026Updated last week
- Molecular dynamics without molecules: searching the conformational space of proteins with generative neural networks☆11Jun 13, 2022Updated 3 years ago
- Code for accurate inference of tree topologies from multiple sequence alignments using deep learning☆10Nov 3, 2019Updated 6 years ago
- DeepSoluE☆14Sep 18, 2023Updated 2 years ago
- ☆13Dec 14, 2023Updated 2 years ago