Alternatives and similar repositories for DeepAnnotator

Users that are interested in DeepAnnotator are comparing it to the libraries listed below

• TrinityCTAT / CTAT-VirusIntegrationFinder
  ☆17Updated 2 months ago
• yuhanH / HPViewer
  ☆15Updated 7 years ago
• novoalab / Nano3P_Seq
  Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)
  ☆13Updated 3 months ago
• huangnengCSU / longcallR
  LongcallR is a SNP caller for single molecule long-read RNA-seq data
  ☆67Updated last month
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆38Updated 7 months ago
• broadinstitute / longbow
  Annotation and segmentation of MAS-seq data
  ☆20Updated 2 years ago
• cmdcolin / mafviewer
  A JBrowse plugin to view multiple alignment format (MAF) files
  ☆27Updated last year
• jsh58 / DMRfinder
  Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data
  ☆28Updated 2 years ago
• TheJacksonLaboratory / SVE
  ☆51Updated 6 years ago
• churchill-lab / g2gtools
  Personal diploid genome creation and coordinate conversion
  ☆30Updated 6 months ago
• hoffmangroup / polyidus
  Polyidus provides a framework to catch chimeric DNA sequences with a tale of python
  ☆10Updated 2 years ago
• lorrainea / CNEFinder
  CNEFinder: Finding Conserved Non-coding Elements in Genomes
  ☆25Updated 4 years ago
• Xinglab / lr2rmats
  Long read to rMATS
  ☆32Updated 2 years ago
• riverlee / MitoSeek
  Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing
  ☆41Updated 6 years ago
• 10XGenomics / longranger
  10x Genomics Linked-Read Alignment, Variant Calling, Phasing, and Structural Variant Calling
  ☆33Updated 5 years ago
• scottgigante / haplotyped-methylome
  Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation
  ☆23Updated 6 years ago
• jts / methylation-analysis
  ☆45Updated 8 years ago
• EI-CoreBioinformatics / portcullis
  Splice junction analysis and filtering from BAM files
  ☆42Updated 3 years ago
• Kuanhao-Chao / splam
  ✂️ Deep learning-based splice site predictor that improves spliced alignments
  ☆54Updated 7 months ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆30Updated 3 years ago
• aakechin / cutPrimers
  curPrimers is a tool for trimming primer sequences from amplicon based NGS reads
  ☆16Updated 4 months ago
• vpc-ccg / calib
  Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.
  ☆39Updated 2 years ago
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆24Updated last year
• adnaniazi / tailfindr
  An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
  ☆54Updated last year
• namphuon / ViFi
  Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.
  ☆29Updated 4 years ago
• finkelsteinlab / freebarcodes
  FREE Divergence Error-Correcting DNA Barcodes
  ☆10Updated 7 years ago
• srbehera / DRAGEN_Analysis
  ☆35Updated last year
• RobersonLab / motif_scraper
  Tool for finding matches to degenerate sequence motifs in FASTA files.
  ☆13Updated last year
• mortazavilab / lapa
  Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.
  ☆31Updated last year
• pinellolab / AmpUMI
  Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)
  ☆42Updated last month