A Rust wrapper around the Entrez API. Helps you access the Entrez API using idiomatic Rust. It also provides tools to parse the XML results from Entrez.
☆20Dec 8, 2022Updated 3 years ago
Alternatives and similar repositories for entrez-rs
Users that are interested in entrez-rs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Nov 5, 2024Updated last year
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Aug 7, 2023Updated 2 years ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24May 30, 2024Updated last year
- Interactive shell for sqlite-utils using litecli☆14Jul 27, 2023Updated 2 years ago
- A Rust library for parsing, writing and manipulating Genbank sequence files☆22Apr 20, 2025Updated 11 months ago
- ☆15Apr 19, 2018Updated 7 years ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆11Aug 8, 2018Updated 7 years ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆24Mar 7, 2026Updated 2 weeks ago
- A collection of plots for long read sequencing FastQ files from devices like Oxford Nanopore's MinION and PromethION.☆12Feb 14, 2023Updated 3 years ago
- ☆10Apr 21, 2024Updated last year
- ☆32Dec 16, 2022Updated 3 years ago
- Enhanced Artificial Genome Engine: next generation sequencing reads simulator☆33May 20, 2020Updated 5 years ago
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Aug 2, 2022Updated 3 years ago
- autoprot provides standardised, fast, and reliable proteomics data analysis while ensuring a high customisability needed to tailor the an…☆10Mar 16, 2026Updated last week
- A set of scripts for the assembly of chloroplast genomes out of whole-genome sequencing reads☆12May 2, 2019Updated 6 years ago
- Using Biopython's Bio.Entrez package to Access NCBI Entrez databases☆16Jun 26, 2014Updated 11 years ago
- Identifying ViRal and Circular content in metAgenomes☆14Dec 13, 2018Updated 7 years ago
- Nextflow-powered MS-DIAL☆12Jan 13, 2025Updated last year
- Plugin for LLM adding a Markov chain generating model☆20Jul 3, 2024Updated last year
- Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing libra…☆15Feb 27, 2024Updated 2 years ago
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data☆13Updated this week
- Optimal sequence-to-graph alignment with recombinations☆40Jul 25, 2025Updated 7 months ago
- protocols for bioinformatics data analysis☆10Sep 22, 2020Updated 5 years ago
- ☆22Jan 3, 2025Updated last year
- Desktop is an open source application for managing multi-window, cross-platform desktop applications.☆17Jul 18, 2023Updated 2 years ago
- Nim Library for sequence (protein/nucleotide) bioinformatics☆22Aug 24, 2020Updated 5 years ago
- Efficient querying of biological databases☆42Oct 27, 2025Updated 4 months ago
- FASTA and FASTQ parsing in Rust☆83Mar 14, 2025Updated last year
- A Modern Perl Framework for High Throughput Sequencing analysis☆17May 6, 2020Updated 5 years ago
- Target / Integrative Genetic Element Retriever: precisely maps IGEs (a defined type of genomic island) in bacterial and archaeal genomes;…☆19Sep 2, 2025Updated 6 months ago
- This Python script retrieves and analyzes scientific literature from PubMed related to specific genes, creates a word cloud visualization…☆11Nov 15, 2023Updated 2 years ago
- ☆36Nov 20, 2023Updated 2 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Jun 26, 2018Updated 7 years ago
- Index kmtricks bf matrices☆47Feb 13, 2026Updated last month
- ☆10Dec 4, 2023Updated 2 years ago
- Self-contained, multi-threaded fasta/q parser☆48Mar 10, 2026Updated last week
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆212Mar 3, 2026Updated 2 weeks ago
- Rust bindings for the tskit library☆18Mar 12, 2026Updated last week