Exact, SIMD-accelerated sequence alignment (Smith-Waterman, Needleman-Wunsch, semi-global, overlap)
☆12Aug 10, 2026Updated 3 months ago
Alternatives and similar repositories for hyalite
Users that are interested in hyalite are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Fast aligner for long reads (Rust): Oxford Nanopore DNA, direct RNA and cDNA, and PacBio HiFi. minimap2-level accuracy, 2.6-8x faster☆19Oct 29, 2026Updated 2 weeks ago
- A pure rust reimplementation of rapid-gzip by Maximilian Knespel and Holger Brunst☆23Aug 10, 2026Updated 3 months ago
- Fast long-read RNA-seq mapping to a transcriptome with locally consistent parsing☆30Updated this week
- Partial Order Alignment with consensus CLI and Rust library☆13Oct 21, 2026Updated 3 weeks ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆23Nov 6, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- How many distinct k-mers are there in a sequence?☆11Oct 26, 2026Updated 2 weeks ago
- Tools to explore Minimum Decycling Sets (MDSs) of the de Bruijn graph☆12Sep 11, 2025Updated last year
- Homology-based ANI estimation at unprecedented scales🦀☆30Updated this week
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- TeraTools: Terabase scale pangenome analysis tools☆13Updated this week
- Single-cache-miss rank queries over size 2 and 4 alphabets. 2x faster than all other Rust crates.☆18Apr 1, 2026Updated 7 months ago
- A Rust implementation of SSHash☆20Updated this week
- Parallel Construction of Suffix Arrays in Rust☆26Updated this week
- plane sweep filtering genome alignments☆24Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- bedpull - Pull the query sequence from bam or fasta references using a bed file☆16Sep 24, 2026Updated last month
- Names a single-cell RNA library's layout (kit, chemistry, barcode list, strand, library type) from its first reads☆12Oct 14, 2026Updated last month
- Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.☆21Aug 26, 2026Updated 2 months ago
- A rust implementation of STAR☆94Nov 3, 2026Updated last week
- A decoder that automatically detects compression format (gzip, bzip2, xz, zstd) via external crates. Includes encoder as well.☆13Jan 8, 2026Updated 10 months ago
- A minimap2 implementation with binseq inputs☆18Dec 11, 2025Updated 11 months ago
- k-mers and the like☆22Updated this week
- ☆29Oct 30, 2026Updated 2 weeks ago
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆48Oct 11, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fast FASTA indexing, extraction, validation, and stats in a few MB of memory for any file size. One static binary and a Zig package; hand…☆16Oct 15, 2026Updated 3 weeks ago
- A tool to aid virus sequencing and accelerate IRMA.☆13Updated this week
- Generate random test data for bioinformatics☆27Jun 17, 2024Updated 2 years ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated 2 years ago
- Fast and exact gap-affine partial order alignment☆72Oct 22, 2026Updated 3 weeks ago
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆51Updated this week
- Run a command and report its process tree's CPU, memory, and I/O usage☆21Updated this week
- Skiver: Reference-free quality control of (meta)genomic sequencing datasets using (k, v)-mer sketches☆13Aug 19, 2026Updated 2 months ago
- ☆18Oct 12, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- ☆15Oct 31, 2026Updated 2 weeks ago
- ☆12Nov 8, 2026Updated last week
- Extremely fast and accurate Nanopore demultiplexing☆106Sep 5, 2026Updated 2 months ago
- process any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED☆25Sep 3, 2026Updated 2 months ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 10 months ago
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 8 months ago
Are these results useful?