Tools for participants in the ICGC-TCGA DREAM Mutation Calling challenge
☆15Dec 10, 2015Updated 10 years ago
Alternatives and similar repositories for ICGC-TCGA-DREAM-Mutation-Calling-challenge-tools
Users that are interested in ICGC-TCGA-DREAM-Mutation-Calling-challenge-tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- New url: https://github.com/biointec/halvade☆19Apr 19, 2017Updated 9 years ago
- A tissue-specific single-cell biological age model☆14Jul 26, 2023Updated 3 years ago
- Homebrew repository for CloudBioLinux: incubator for formulas to end up in homebrew-science☆19Oct 17, 2016Updated 9 years ago
- A standalone end-to-end data analysis pipeline for Duplex Sequencing☆23Oct 25, 2023Updated 2 years ago
- ☆22May 28, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- tools for adding mutations to existing .bam files, used for testing mutation callers☆251Updated this week
- Comprehensive Human Expressed SequenceS☆19Jul 13, 2025Updated last year
- Stupid Simple Structural Variant View☆25Nov 21, 2016Updated 9 years ago
- Playing with the API for ClinicalTrials.gov and LillyCOI☆14Jul 28, 2014Updated 12 years ago
- Battenberg R package for subclonal copynumber estimation☆99May 11, 2026Updated 2 months ago
- High-definition reconstruction of clonal composition from next-generation sequencing data☆44Jun 10, 2016Updated 10 years ago
- A Snakefile to parallelize bwa.☆13Oct 25, 2013Updated 12 years ago
- Core consonance utilities for scheduling, reporting on, and provisioning VMs for workflows☆14Jun 27, 2018Updated 8 years ago
- A framework to infer mutational signatures in cancer over time☆58Jul 9, 2019Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- An algorithm for clonal tree reconstruction from multi-sample cancer sequencing data☆14Apr 1, 2018Updated 8 years ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆48May 18, 2017Updated 9 years ago
- Inferring selection in cancer sequencing data using ABC and population based simulations☆11Jan 31, 2021Updated 5 years ago
- Automatic quality control for FASTQ sequencing files☆13Feb 27, 2018Updated 8 years ago
- Evaluate the performances (precision and recall) of structural variation (SV) callers☆36Sep 8, 2025Updated 11 months ago
- BitSeq code☆16Jun 21, 2021Updated 5 years ago
- [DEPRECATED] Docker containers for Bioconductor☆49Mar 15, 2023Updated 3 years ago
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.☆11May 19, 2020Updated 6 years ago
- Stochastic simulation of next-generation sequencing data from neutrally evolving tumors☆10Nov 9, 2016Updated 9 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A python package for learning mutational signatures and their multidimensional genomic properties☆15Sep 1, 2020Updated 5 years ago
- Allele-specific copy number estimation with whole genome sequencing☆23Nov 10, 2023Updated 2 years ago
- Java SDK for the Common Workflow Language standards☆16Updated this week
- Bootstrap imputation for scRNAseq data☆12Jul 18, 2020Updated 6 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- Java Bindings (JNI) for bwa☆20Dec 15, 2016Updated 9 years ago
- Miscellaneous functionality for manipulating Apache Spark RDDs.☆22Dec 29, 2018Updated 7 years ago
- biostat final exam data and code☆10Jun 12, 2020Updated 6 years ago
- Comparison of principal components analysis with diffusion maps on toy data sets and a molecular simulation trajectory☆17Feb 1, 2017Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- GPU implementation of ARD NMF☆45Jan 20, 2026Updated 6 months ago
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆43Sep 16, 2021Updated 4 years ago
- Chromatin domains bursting with flavor☆12Dec 29, 2019Updated 6 years ago
- SPRUCE: Somatic Phylogeny Reconstruction using Combinatorial Enumeration☆14Jun 6, 2018Updated 8 years ago
- A course on Analysing Next Generation (/High Throughput etc..) Sequencing data using Bioconductor☆44May 4, 2016Updated 10 years ago
- Python interface to the GenoLogics LIMS server via its REST API.☆30Aug 13, 2025Updated 11 months ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆187Apr 12, 2024Updated 2 years ago