Sage-Bionetworks-Challenges / ICGC-TCGA-DREAM-Mutation-Calling-challenge-toolsView external linksLinks
Tools for participants in the ICGC-TCGA DREAM Mutation Calling challenge
☆15Dec 10, 2015Updated 10 years ago
Alternatives and similar repositories for ICGC-TCGA-DREAM-Mutation-Calling-challenge-tools
Users that are interested in ICGC-TCGA-DREAM-Mutation-Calling-challenge-tools are comparing it to the libraries listed below
Sorting:
- Evaluate the performances (precision and recall) of structural variation (SV) callers☆36Sep 8, 2025Updated 5 months ago
- A Snakefile to parallelize bwa.☆13Oct 25, 2013Updated 12 years ago
- GPU implementation of ARD NMF☆45Jan 20, 2026Updated 3 weeks ago
- Inferring selection in cancer sequencing data using ABC and population based simulations☆11Jan 31, 2021Updated 5 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- Stochastic simulation of next-generation sequencing data from neutrally evolving tumors☆10Nov 9, 2016Updated 9 years ago
- Playing with the API for ClinicalTrials.gov and LillyCOI☆14Jul 28, 2014Updated 11 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago
- ☆15May 6, 2024Updated last year
- ☆14Nov 3, 2021Updated 4 years ago
- biostat final exam data and code☆10Jun 12, 2020Updated 5 years ago
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.☆11May 19, 2020Updated 5 years ago
- Extremely fast Variant Call Format annotation☆11Dec 25, 2024Updated last year
- [DEPRECATED] Docker containers for Bioconductor☆49Mar 15, 2023Updated 2 years ago
- A python package for learning mutational signatures and their multidimensional genomic properties☆15Sep 1, 2020Updated 5 years ago
- Bootstrap imputation for scRNAseq data☆12Jul 18, 2020Updated 5 years ago
- ☆12Jul 19, 2019Updated 6 years ago
- A tissue-specific single-cell biological age model☆13Jul 26, 2023Updated 2 years ago
- Example scripts for analyzing CUT&RUN datasets☆13Oct 3, 2018Updated 7 years ago
- Nextflow pipeline for BWA, BWA2 and STAR alignments☆12Jul 22, 2024Updated last year
- BEAST+BEAGLE compiled with NVIDIA CUDA☆12Jul 19, 2024Updated last year
- A turnkey solution for joining federated research networks.☆13Feb 10, 2026Updated last week
- ☆15Oct 19, 2023Updated 2 years ago
- Chromatin domains bursting with flavor☆12Dec 29, 2019Updated 6 years ago
- Molecular analysis of pre-invasive lung cancer samples☆14Jan 18, 2019Updated 7 years ago
- dalmatian is a collection of high-level companion functions for Firecloud and FISS.☆19Jan 27, 2025Updated last year
- A Foundation Language Model For Multilayer Regulation of RNA☆18Nov 30, 2025Updated 2 months ago
- Scripts for HiRES analysis☆14Jul 26, 2024Updated last year
- Scripts used for the ACT paper☆12May 6, 2021Updated 4 years ago
- BitSeq code☆16Jun 21, 2021Updated 4 years ago
- HiSV: a computational pipeline for structural variation detection from Hi-C data☆18Jun 20, 2025Updated 7 months ago
- DECIPHER for learning high-fidelity disentangled embeddings from spatial omics data☆24Jan 20, 2026Updated 3 weeks ago
- Automatic quality control for FASTQ sequencing files☆13Feb 27, 2018Updated 7 years ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆247Oct 18, 2024Updated last year
- Java SDK for the Common Workflow Language standards☆15Feb 2, 2026Updated 2 weeks ago
- SPRUCE: Somatic Phylogeny Reconstruction using Combinatorial Enumeration☆14Jun 6, 2018Updated 7 years ago
- Comparison of principal components analysis with diffusion maps on toy data sets and a molecular simulation trajectory☆17Feb 1, 2017Updated 9 years ago
- Core consonance utilities for scheduling, reporting on, and provisioning VMs for workflows☆14Jun 27, 2018Updated 7 years ago
- A Generic Informed Consent Service☆17Feb 12, 2025Updated last year