MyersGroup / testisAtlasLinks
Code used for mouse single cell RNAseq testis atlas
☆12Updated 5 years ago
Alternatives and similar repositories for testisAtlas
Users that are interested in testisAtlas are comparing it to the libraries listed below
Sorting:
- Toolkit for metacell analysis☆23Updated last year
- Bead-based single-cell atac processing☆33Updated 4 years ago
- Calculation of distance metrics for matrices☆26Updated 6 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Updated 6 years ago
- Clone of the Bioconductor repository for the batchelor package.☆18Updated 10 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- corto (Correlation Tool): an R package to generate correlation-based DPI networks☆20Updated 2 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆22Updated last year
- ☆43Updated 5 years ago
- Cell type purification by single-cell transcriptome-trained sorting☆14Updated 6 years ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆23Updated 2 years ago
- A R framework for pipeline benchmarking, with application to single-cell RNAseq☆42Updated 4 years ago
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆18Updated 4 years ago
- This repository contains HCA Benchmarking codes☆26Updated 6 years ago
- Clone identification from single-cell data☆61Updated 3 years ago
- Identify and correct invalid gene symbols☆62Updated last year
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆47Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆41Updated 4 years ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆29Updated last week
- Harvard FAS informatics scRNAseq workshop website☆38Updated 6 years ago
- Trans-association between HLA and TCR-CDR3☆19Updated 2 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated 2 years ago
- Human brain, >200,000 nuclei☆23Updated 4 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Updated 3 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- Lightweight Iterative Gene set Enrichment in R☆58Updated last year
- ☆56Updated 5 years ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Updated 2 years ago
- processes GoT amplicon data and generates a table of metrics☆32Updated 3 years ago
- Single cell interactive plotting tools☆24Updated 5 years ago