Code used for mouse single cell RNAseq testis atlas
☆12Nov 28, 2020Updated 5 years ago
Alternatives and similar repositories for testisAtlas
Users that are interested in testisAtlas are comparing it to the libraries listed below
Sorting:
- Single Cell RNA-seq UMI Filtering Facilitator☆10Oct 6, 2025Updated 4 months ago
- GEMINI: A variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens☆16Nov 29, 2022Updated 3 years ago
- Clone of the Bioconductor repository for the MouseGastrulationData package.☆13Jan 24, 2024Updated 2 years ago
- iSEE repository for the Shiny contest☆13Mar 15, 2020Updated 5 years ago
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆18Jun 3, 2021Updated 4 years ago
- Repository for supplemental material of manuscripts☆19Jun 30, 2021Updated 4 years ago
- Feature Ranking in (possibly large) Clustered Single Cell Data☆41Apr 15, 2021Updated 4 years ago
- ☆20Mar 28, 2017Updated 8 years ago
- ☆64Mar 18, 2025Updated 11 months ago
- countsimQC - Compare characteristic features of count data sets☆30Feb 7, 2026Updated 3 weeks ago
- Single cell interactive plotting tools☆24Jun 12, 2020Updated 5 years ago
- A repository for benchmarking spatial deconvolution and mapping tools☆36May 13, 2025Updated 9 months ago
- ☆14Jan 3, 2023Updated 3 years ago
- ☆12Oct 29, 2025Updated 4 months ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Dec 16, 2019Updated 6 years ago
- Functions for single cell data analysis☆32May 28, 2021Updated 4 years ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- Analysis pipeline for processing paired-end Illumina reads obtained after ancient mtDNA target enrichment capture.☆11Mar 27, 2020Updated 5 years ago
- A Google Chrome extension with the sole purpose of adding copy and paste functionality to Overleaf on your Chrome browser.☆17May 13, 2024Updated last year
- ☆13Jun 15, 2024Updated last year
- ☆10Oct 18, 2021Updated 4 years ago
- Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org☆13Updated this week
- OpenMP offload playground☆10Nov 16, 2024Updated last year
- Gene expression viewer template☆11Aug 30, 2017Updated 8 years ago
- ☆14Mar 8, 2024Updated last year
- bioInfograph: an online tool to design and display multi-panel scientific figure interactively☆12Feb 15, 2022Updated 4 years ago
- Cloyster HPC is a turnkey HPC cluster solution with an user-friendly installer☆10Oct 2, 2025Updated 5 months ago
- An interactive exploration/visualization platform to help you lift the fog from your CRISPR analyses.☆12Nov 12, 2025Updated 3 months ago
- density growing clustering☆10Dec 2, 2021Updated 4 years ago
- An R package for the processing of plate reader and flow cytometry data. This includes: normalisation and calibration of plate reader dat…☆10Aug 12, 2025Updated 6 months ago
- ☆12Jan 12, 2024Updated 2 years ago
- Here you can find the scripts we used in our tutorial "Falling in love with R". You can look for them in our Youtube or Facebook page: Wi…☆12May 13, 2022Updated 3 years ago
- Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer☆42Dec 16, 2025Updated 2 months ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆173Dec 8, 2022Updated 3 years ago
- GPU implementation of ARD NMF☆45Jan 20, 2026Updated last month
- This is the repository for the single-cell transcriptomics application of the Deep Generative Decoder (DGD), developed by the Krogh group…☆15Aug 8, 2024Updated last year
- Scripts and Data associated with our publication on genomic signatures to discriminate LUAD and LUSC lung cancer types using TCGA data☆11Mar 2, 2022Updated 4 years ago
- Prometheus exporter for ARM® Hardware components using HWCPipe.☆12Sep 27, 2021Updated 4 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago