Alternatives and similar repositories for antibody-in-pytorch

Users that are interested in antibody-in-pytorch are comparing it to the libraries listed below

• Furman-Lab / Peptide_docking_with_AF2_and_RosettAfold
  Code and data used in https://doi.org/10.1101/2021.08.01.454656
  ☆53Updated 3 years ago
• piercelab / tcrmodel2
  ☆41Updated 2 months ago
• dahjan / DMS_opt
  ☆68Updated 4 years ago
• oxpig / dlab-public
  Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"
  ☆31Updated 2 years ago
• xinyu-dev / annotate_v
  Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python
  ☆30Updated 2 years ago
• Fleishman-Lab / CUMAb
  ☆19Updated 2 months ago
• dohlee / antiberty-pytorch
  An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.
  ☆24Updated last year
• oxpig / Paragraph
  Antibody paratope prediction using Graph Neural Networks with minimal feature vectors
  ☆37Updated 2 years ago
• oxpig / kasearch
  KA-Search: Rapid and exhaustive sequence identity search of known antibodies
  ☆22Updated 11 months ago
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆59Updated 2 years ago
• AbSciBio / igdesign
  ☆41Updated 5 months ago
• lehner-lab / doubledeepms
  Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…
  ☆19Updated last year
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆42Updated last year
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆49Updated 2 months ago
• oxpig / Graphinity
  Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity
  ☆31Updated 2 months ago
• marcellszi / rna3db
  A dataset for training and benchmarking deep learning models for RNA structure prediction
  ☆56Updated 6 months ago
• samsledje / ConPLex_dev
  ☆49Updated last year
• Wang-Lin-boop / GetPDB
  Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicate…
  ☆41Updated 11 months ago
• Liuxg16 / GeoPPI
  ☆86Updated 2 years ago
• SLx64 / af3cli
  A command-line interface and Python library for generating AlphaFold3 input files.
  ☆34Updated 3 weeks ago
• YAndrewL / CLAPE
  contrastive learning and pre-trained encoder for protein-ligand binding sites prediction
  ☆30Updated 5 months ago
• BEAM-Labs / BALM
  Inference code for Bio-Inspired Antibody Language Model
  ☆25Updated 10 months ago
• leandroradusky / pyfoldx
  pyFoldX: python bindings for FoldX.
  ☆46Updated 3 years ago
• dina-lab3D / NanoNet
  ☆46Updated last year
• piercelab / antibody_benchmark
  Antibody-Antigen Docking and Affinity Benchmark
  ☆71Updated 4 years ago
• AspirinCode / AlphaPPImd
  Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks
  ☆29Updated last year
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆73Updated 5 months ago
• jeffreyruffolo / AntiBERTy
  Antibody-specific masked language model
  ☆55Updated last year
• enai4bio / DeepAAI
  DeepAAI
  ☆31Updated 6 months ago
• alchemab / parapred-pytorch
  PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)
  ☆20Updated last year