Alternatives and similar repositories for antibody-in-pytorch

Users that are interested in antibody-in-pytorch are comparing it to the libraries listed below

• dahjan / DMS_opt
  ☆70Updated 4 years ago
• piercelab / tcrmodel2
  ☆41Updated 4 months ago
• xinyu-dev / annotate_v
  Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python
  ☆30Updated 2 years ago
• oxpig / kasearch
  KA-Search: Rapid and exhaustive sequence identity search of known antibodies
  ☆22Updated last year
• Liuxg16 / GeoPPI
  ☆86Updated 2 years ago
• lehner-lab / doubledeepms
  Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…
  ☆20Updated 2 years ago
• leandroradusky / pyfoldx
  pyFoldX: python bindings for FoldX.
  ☆48Updated 3 years ago
• csi-greifflab / manuscript_insilico_antibody_generation
  ☆23Updated 4 years ago
• Furman-Lab / Peptide_docking_with_AF2_and_RosettAfold
  Code and data used in https://doi.org/10.1101/2021.08.01.454656
  ☆53Updated 3 years ago
• vkola-lab / peds2019
  Quantifying the nativeness of antibody sequences using long short-term memory networks
  ☆17Updated 3 years ago
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆60Updated 2 years ago
• ranganathanlab / bmDCA
  Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).
  ☆35Updated 4 years ago
• oxpig / dlab-public
  Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"
  ☆31Updated 2 years ago
• dina-lab3D / NanoNet
  ☆47Updated last year
• oxpig / Paragraph
  Antibody paratope prediction using Graph Neural Networks with minimal feature vectors
  ☆37Updated 2 years ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆51Updated this week
• marcellszi / rna3db
  A dataset for training and benchmarking deep learning models for RNA structure prediction
  ☆58Updated 7 months ago
• dohlee / antiberty-pytorch
  An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.
  ☆25Updated last year
• Tessier-Lab-UMich / Emi_Pareto_Opt_ML
  ☆20Updated 3 years ago
• JinyuanSun / DDGScan
  DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein
  ☆48Updated last year
• oxpig / Graphinity
  Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity
  ☆43Updated 3 weeks ago
• jeffreyruffolo / AntiBERTy
  Antibody-specific masked language model
  ☆57Updated 2 years ago
• SLx64 / af3cli
  A command-line interface and Python library for generating AlphaFold3 input files.
  ☆35Updated 2 months ago
• biomed-AI / GraphSite
  GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures
  ☆60Updated last year
• oxpig / AbLang2
  An antibody-specific language model focusing on NGL prediction
  ☆30Updated 11 months ago
• oxpig / ABlooper
  Tool for modelling the CDRs of antibodies
  ☆50Updated 2 years ago
• csi-greifflab / developability_profiling
  ☆23Updated 7 months ago
• enai4bio / DeepAAI
  DeepAAI
  ☆31Updated 7 months ago
• DeepRank / deeprank2
  An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.
  ☆53Updated 7 months ago
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆74Updated 6 months ago