Alternatives and similar repositories for APPLS:

Users that are interested in APPLS are comparing it to the libraries listed below

• bpucker / AppliedGenomeResearch
  course about NGS data processing: genomics and transcriptomics
  ☆33Updated 4 years ago
• bpucker / MolecularMethodsInGenomeResearch
  practical course about lab methods in genome research
  ☆23Updated 2 years ago
• cccnrc / plot-VCF
  visual analysis of your VCF files
  ☆32Updated 2 years ago
• sib-swiss / RNAseq-introduction-training
  Webpage of the "Introduction to RNA-Seq: From quality control to pathway analysis - streamed" SIB course.
  ☆14Updated 7 months ago
• gexijin / shinygo
  ☆26Updated last month
• crazyhottommy / pyflow-RNAseq
  RNAseq pipeline based on snakemake
  ☆25Updated 2 years ago
• biocorecrg / ExOrthist
  ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.
  ☆22Updated 4 months ago
• PalMuc / TransPi
  TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
  ☆27Updated 3 years ago
• drostlab / myTAI
  Evolutionary Transcriptomics with R
  ☆42Updated last week
• josuebarrera / GenEra
  genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.
  ☆49Updated 4 months ago
• hbctraining / Intro-to-variant-analysis
  ☆31Updated 2 months ago
• nf-core / dualrnaseq
  Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.
  ☆22Updated 2 weeks ago
• cfarkas / annotate_my_genomes
  A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes
  ☆29Updated last year
• NBISweden / workshop-mlbiostatistics
  ☆16Updated last week
• zhongw2 / GeneTEFlow
  ☆23Updated 3 years ago
• lauguma / GWideCodeML
  A Python package for testing evolutionary hypotheses in genome-wide approaches.
  ☆31Updated 4 years ago
• almeidasilvaf / syntenet
  An R package to infer and analyze synteny networks from protein sequences
  ☆29Updated 4 months ago
• arendsee / phylostratr
  An R framework for phylostratigraphy
  ☆33Updated 3 months ago
• ISUgenomics / common_analyses
  Repository of common bioinformatics scripts
  ☆39Updated 3 years ago
• genomicsITER / one-liners
  Frequently used commands in Bioinformatics
  ☆20Updated 3 months ago
• ISUgenomics / common_scripts
  my bin directory
  ☆45Updated 5 months ago
• pangenome / pggb-workshop
  tutorial on pggb
  ☆33Updated 3 months ago
• koszullab / hicstuff
  Simple library/pipeline to generate and handle Hi-C data.
  ☆37Updated 4 months ago
• jeffersonfparil / compare_genomes
  A comparative genomics workflow using Nextflow, conda, Julia and R
  ☆41Updated 11 months ago
• ridgelab / JustOrthologs
  ☆35Updated 2 years ago
• 123xiaochen / VCFshiny
  ☆29Updated 6 months ago
• apcamargo / tspex
  tspex: tissue-specificity calculator
  ☆29Updated last year
• bpucker / teaching
  This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.
  ☆51Updated 5 months ago
• crazyhottommy / compbio_resources_chatomics
  ☆27Updated last year
• FAANG / analysis-TAGADA
  GENE-SWitCH project RNA-Seq analysis pipeline
  ☆25Updated 2 months ago