Alternatives and similar repositories for teaching

Users that are interested in teaching are comparing it to the libraries listed below

• moiexpositoalonsolab / grenepipe
  A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…
  ☆103Updated last month
• nadegeguiglielmoni / genome_assembly_tools
  List of genome assembly tools
  ☆70Updated last week
• hzi-bifo / RiboDetector
  Accurate and rapid RiboRNA sequences Detector based on deep learning
  ☆113Updated last year
• bpucker / AppliedGenomeResearch
  course about NGS data processing: genomics and transcriptomics
  ☆33Updated 4 years ago
• harvardinformatics / GenomeAnnotation
  Best practices and workflow for genome annotation
  ☆77Updated 3 months ago
• chasewnelson / SNPGenie
  Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
  ☆115Updated last year
• ridgelab / JustOrthologs
  ☆35Updated 2 years ago
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆86Updated 3 years ago
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆108Updated 3 weeks ago
• AstrobioMike / bit
  Bioinformatics Tools
  ☆89Updated last week
• MetazoaPhylogenomicsLab / FANTASIA
  ☆27Updated 4 months ago
• Juke34 / awesome-awesomeness-bioinformatics
  A list of awesome awesomeness related to bioinformatics and associated fields
  ☆41Updated 4 months ago
• nvelden / geneviewer
  An R package designed for drawing gene arrow maps
  ☆84Updated 2 weeks ago
• DerKevinRiehl / TransposonUltimate
  TransposonUltimate - a holistic set of tools for transposon identification
  ☆84Updated 3 years ago
• rhysf / Synima
  Synteny Imager
  ☆63Updated 2 weeks ago
• slt666666 / NLRtracker
  NLR annotation tool
  ☆32Updated last year
• mritchielab / long_read_tools
  A catalogue of available long read sequencing data analysis tools
  ☆78Updated 5 months ago
• zhaotao1987 / SynNet-Pipeline
  Workflow for Building Microsynteny Networks
  ☆55Updated 3 years ago
• Trinotate / Trinotate.github.io
  web documentation for Trinotate
  ☆48Updated 2 years ago
• wrf / genomeGTFtools
  convert various features into a GFF-like file for use in genome browsers
  ☆72Updated 3 weeks ago
• abacus-gene / paml-tutorial
  paml documentation and tutorials
  ☆60Updated 2 months ago
• ISUgenomics / common_scripts
  my bin directory
  ☆45Updated 9 months ago
• rapidspeciation / biodiversity_genomics_course
  biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute
  ☆54Updated 2 months ago
• akcorut / kGWASflow
  kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
  ☆39Updated last year
• Sydney-Informatics-Hub / Shotgun-Metagenomics-Analysis
  Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more
  ☆33Updated 2 years ago
• MikeAxtell / ShortStack
  ShortStack: Comprehensive annotation and quantification of small RNA genes
  ☆93Updated 2 months ago
• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆68Updated 7 years ago
• NGSEP / NGSEPcore
  NGSEP is an integrated framework for analysis of short and long DNA high throughput sequencing reads. A complete list of functionalities …
  ☆53Updated 2 months ago
• shenwei356 / perfect-bioinformatic-tools
  What should perfect bioinformatic tools be like?
  ☆129Updated 3 months ago
• art-egorov / lovis4u
  Bioinformatics tool for Locus Visualisation
  ☆112Updated 2 months ago