Alternatives and similar repositories for teaching

Users that are interested in teaching are comparing it to the libraries listed below

• bpucker / AppliedGenomeResearch
  course about NGS data processing: genomics and transcriptomics
  ☆33Updated 4 years ago
• moiexpositoalonsolab / grenepipe
  A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…
  ☆108Updated 4 months ago
• nadegeguiglielmoni / genome_assembly_tools
  List of genome assembly tools
  ☆80Updated 3 weeks ago
• harvardinformatics / GenomeAnnotation
  Best practices and workflow for genome annotation
  ☆78Updated 6 months ago
• ridgelab / JustOrthologs
  ☆35Updated 2 years ago
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆113Updated 3 months ago
• chasewnelson / SNPGenie
  Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
  ☆117Updated 2 years ago
• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆68Updated 7 years ago
• akcorut / kGWASflow
  kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
  ☆39Updated last year
• KamilSJaron / k-mer-approaches-for-biodiversity-genomics
  k-mer learning materials
  ☆80Updated 8 months ago
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆87Updated 3 years ago
• ISUgenomics / common_scripts
  my bin directory
  ☆45Updated last month
• epi2me-labs / wf-basecalling
  ☆46Updated last week
• rhysf / Synima
  Synteny Imager
  ☆64Updated 3 months ago
• hzi-bifo / RiboDetector
  Accurate and rapid RiboRNA sequences Detector based on deep learning
  ☆115Updated last year
• Trinotate / Trinotate.github.io
  web documentation for Trinotate
  ☆48Updated 2 years ago
• nclark-lab / RERconverge
  Analysis of convergence between organismal traits and DNA/protein sequences
  ☆58Updated last week
• DerKevinRiehl / TransposonUltimate
  TransposonUltimate - a holistic set of tools for transposon identification
  ☆84Updated 3 years ago
• jeffersonfparil / compare_genomes
  A comparative genomics workflow using Nextflow, conda, Julia and R
  ☆45Updated last year
• abacus-gene / paml-tutorial
  paml documentation and tutorials
  ☆62Updated 5 months ago
• mritchielab / long_read_tools
  A catalogue of available long read sequencing data analysis tools
  ☆80Updated last month
• Juke34 / awesome-awesomeness-bioinformatics
  A list of awesome awesomeness related to bioinformatics and associated fields
  ☆41Updated 7 months ago
• wrf / genomeGTFtools
  convert various features into a GFF-like file for use in genome browsers
  ☆72Updated 3 months ago
• MetazoaPhylogenomicsLab / FANTASIA
  ☆29Updated last month
• Joseph7e / MDIBL-T3-WGS-Tutorial
  Bacterial Genome Assembly and Assessment
  ☆26Updated last month
• grimmlab / MicrobiomeBestPracticeReview
  Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
  ☆120Updated last year
• jamiemcg / BUSCO_phylogenomics
  BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
  ☆81Updated last year
• vappiah / bacterial-genomics-tutorial
  ☆59Updated last year
• bhattlab / kraken2_classification
  Snakemake workflow for metagenomic classification with Kraken2
  ☆66Updated 2 years ago
• nvelden / geneviewer
  An R package designed for drawing gene arrow maps
  ☆91Updated last month