bpucker / AppliedGenomeResearchLinks
course about NGS data processing: genomics and transcriptomics
☆33Updated this week
Alternatives and similar repositories for AppliedGenomeResearch
Users that are interested in AppliedGenomeResearch are comparing it to the libraries listed below
Sorting:
- my bin directory☆45Updated 5 months ago
- A set of workflows written in Nextflow for Genome Annotation.☆46Updated 2 weeks ago
- practical course about lab methods in genome research☆23Updated this week
- A catalogue of available long read sequencing data analysis tools☆85Updated last month
- Repository of common bioinformatics scripts☆39Updated 4 years ago
- A comparative genomics workflow using Nextflow, conda, Julia and R☆49Updated last year
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆67Updated last year
- Best practices and workflow for genome annotation☆79Updated 9 months ago
- Applied Python Programming for Life Scientists☆26Updated this week
- Simple bacterial assembly and annotation pipeline☆81Updated 2 weeks ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 7 months ago
- convert various features into a GFF-like file for use in genome browsers☆72Updated 2 weeks ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆35Updated last year
- ☆34Updated 2 years ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆26Updated 4 months ago
- kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.☆45Updated last year
- web documentation for Trinotate☆48Updated 3 years ago
- perSVade: personalized Structural Variation detection☆40Updated 2 weeks ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆29Updated 6 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆50Updated 5 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 2 months ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 3 years ago
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆27Updated last year
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated last year
- This repository hosts a large collection of Nextflow snippets☆56Updated last year
- In-silico PCR, primer design and padlock design for in-situ sequencing☆53Updated 3 weeks ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- A program for detection of tRNA genes☆83Updated 3 years ago
- Scripting analyses of genomes in Ensembl Plants☆42Updated last month
- tutorial on pggb☆36Updated last year