bpucker / AppliedGenomeResearchLinks
course about NGS data processing: genomics and transcriptomics
☆33Updated 4 years ago
Alternatives and similar repositories for AppliedGenomeResearch
Users that are interested in AppliedGenomeResearch are comparing it to the libraries listed below
Sorting:
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation☆27Updated last year
- practical course about lab methods in genome research☆23Updated 2 years ago
- my bin directory☆45Updated 8 months ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆61Updated 10 months ago
- Best practices and workflow for genome annotation☆77Updated 3 months ago
- This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.☆51Updated this week
- A list of awesome awesomeness related to bioinformatics and associated fields☆41Updated 3 months ago
- Repository of common bioinformatics scripts☆39Updated 3 years ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- convert various features into a GFF-like file for use in genome browsers☆72Updated last week
- A catalogue of available long read sequencing data analysis tools☆78Updated 4 months ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆86Updated last year
- perSVade: personalized Structural Variation detection☆40Updated last week
- Simple bacterial assembly and annotation pipeline☆75Updated this week
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆31Updated last month
- ☆35Updated 2 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆61Updated 10 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆107Updated this week
- Error correction for Illumina RNA-seq reads☆67Updated last year
- My collection of light bioinformatics analysis pipelines for specific tasks☆75Updated last year
- A comparative genomics workflow using Nextflow, conda, Julia and R☆45Updated last year
- collection of bioinformatic scripts☆31Updated last year
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆48Updated 2 weeks ago
- This repository hosts a large collection of Nextflow snippets☆57Updated 5 months ago
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated 2 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated last year
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆59Updated last year