A repository for the lessons and notebooks used for Binder tutorials
☆19Aug 4, 2020Updated 5 years ago
Alternatives and similar repositories for topic-metagenomics
Users that are interested in topic-metagenomics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15Mar 14, 2023Updated 3 years ago
- Tutorial for Metagenomics Analyses☆10Jun 16, 2020Updated 6 years ago
- Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes☆68Jun 26, 2022Updated 4 years ago
- Command line client and Python libraries for CosmosID API☆13Oct 28, 2025Updated 9 months ago
- Data, scripts, and outputs for the npj Biofilms and Microbiomes paper "Analysis of microbial compositions: A review of normalization and …☆11Aug 23, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Advanced metagenomic Sequence Analysis in R☆15Aug 17, 2018Updated 7 years ago
- METAgenomic LONgitudinal Differential Abundance method☆16Dec 17, 2019Updated 6 years ago
- Repository of the integrated mouse gut metagenomic catalog☆20Mar 14, 2022Updated 4 years ago
- Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.☆36Jul 15, 2019Updated 7 years ago
- A repository for the R, Python, and Javascript notebooks and files associated with the ODSC West 2021 tutorial -- Visualizing and Analyzi…☆11Nov 17, 2021Updated 4 years ago
- Metagenomics Workshop☆27Nov 23, 2016Updated 9 years ago
- shotgun pipeline☆12Apr 3, 2019Updated 7 years ago
- This repository includes the code used in our multiomics BMI study.☆20Jul 6, 2023Updated 3 years ago
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆12May 25, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆19Nov 16, 2018Updated 7 years ago
- ☆26Oct 9, 2020Updated 5 years ago
- The seqtime R package provides functions to analyse sequencing data time series and to simulate community dynamics☆20Dec 9, 2022Updated 3 years ago
- Test sets and pipeline scripts for pan-genomic graph analysis☆17Jan 30, 2025Updated last year
- Repo for a Microbiome Protocol☆10Apr 26, 2018Updated 8 years ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆21Oct 17, 2023Updated 2 years ago
- GitKraken lesson (forked from HBS-RCS)☆10Mar 20, 2026Updated 4 months ago
- Visualization and analysis platform for metabolic data and network pattern recognition☆42Mar 24, 2025Updated last year
- Metagenomic pipeline and other general scripts used in the lab.☆36Jan 24, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Workshop materials for SFSU SCIP 2022.☆16Jun 6, 2022Updated 4 years ago
- ☆11May 14, 2025Updated last year
- Standardized and Automated MetaBarcoding Analyses workflow (Mirror)☆13Jun 28, 2023Updated 3 years ago
- Course material for OPEN & REPRODUCIBLE MICROBIOME DATA ANALYSIS SPRING SCHOOL☆30May 1, 2020Updated 6 years ago
- A Python package for microbiome sequencing analysis with QIIME 2☆47Jan 28, 2024Updated 2 years ago
- Differential analysis of multi-omics data based on the Tweedie distribution☆31May 7, 2026Updated 2 months ago
- A script to make downloading of SRA/GEO data easier☆34Jun 30, 2026Updated 3 weeks ago
- Graphinate. Data to Graphs.☆24Jun 24, 2026Updated last month
- ☆15Feb 7, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- An R package for microbial community analysis in an environmental context☆67Sep 23, 2020Updated 5 years ago
- ☆29Sep 29, 2025Updated 10 months ago
- R implementation of the LEfSe method☆67May 14, 2026Updated 2 months ago
- programs and scripts, mainly python, for analyses related to nucleic or protein sequences☆24May 29, 2026Updated 2 months ago
- This repository contains teaching material for the 3rd International Summer School on Non-Targeted Metabolomics Data Mining for Biomedica…☆12Aug 25, 2023Updated 2 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆32Nov 23, 2022Updated 3 years ago
- An R package for the processing of plate reader and flow cytometry data. This includes: normalisation and calibration of plate reader dat…☆10Apr 22, 2026Updated 3 months ago