Alternatives and similar repositories for topic-metagenomics:

Users that are interested in topic-metagenomics are comparing it to the libraries listed below

• EnvGen / metagenomics-workshop
  Metagenomics Workshop
  ☆28Updated 8 years ago
• ohlab / SMEG
  Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset
  ☆20Updated 4 years ago
• microbiome-resources / Qiime2-Microbiome-workshop
  ☆15Updated 2 years ago
• SegataLab / panphlan
  PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples
  ☆45Updated last year
• biobakery / metawibele
  MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome
  ☆21Updated 5 months ago
• microUCPH / amplicon_data_analysis
  Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project
  ☆11Updated 2 years ago
• GenomicsAotearoa / metagenomics_summer_school
  Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
  ☆55Updated 6 months ago
• ignasrum / hocort
  HoCoRT - Remove specific organisms from sequencing reads
  ☆17Updated 2 months ago
• SegataLab / cmseq
  Set of utilities on sequences and BAM files
  ☆27Updated 3 years ago
• Gibbons-Lab / medi
  Metagenomic Estimation of Dietary Intake and Content.
  ☆25Updated 3 weeks ago
• waldronlab / curatedMetagenomicDataAnalyses
  Analyses in R and Python Using curatedMetagenomicData
  ☆29Updated 2 months ago
• lmlui / Jorg
  MAG Circularization Method
  ☆33Updated 2 years ago
• xiaoli-dong / metaerg
  ☆41Updated 4 years ago
• Nick243 / Introduction-to-Metagenomics-Summer-Workshop-2019
  Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.
  ☆32Updated 5 years ago
• putonti / virMine
  ☆18Updated 2 years ago
• WatsonLab / KOunt
  Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.
  ☆24Updated 5 months ago
• mgtools / MinPath
  MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…
  ☆20Updated 3 years ago
• Chartiza / Microbiome
  scripts for microbiome analysis
  ☆11Updated 8 months ago
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆50Updated 5 years ago
• blekhmanlab / biomehorizon
  Plot microbiome time series in parallel
  ☆26Updated last year
• victoriapascal / gutsmash
  gutSMASH
  ☆53Updated 3 months ago
• ivlachos / agamemnon
  Accurate metagenomi/metatranscriptomic analysis pipeline
  ☆23Updated 3 years ago
• arumugamlab / msamtools
  Metagenomics-related extended functionalities to samtools
  ☆21Updated last year
• medema-group / BiG-MAP
  ☆29Updated last week
• ngs-docs / 2018-cicese-metatranscriptomics
  repo for cicese metatranscriptomics workshop, nov 2018
  ☆14Updated 5 years ago
• SegataLab / metamlst
  MetaMLST is a computational tool for in-silico Multi-Locus Sequence Typing from metagenomic data.
  ☆14Updated 2 years ago
• biobakery / maaslin3
  MaAsLin3: Microbiome Multivariate Association with Linear Models
  ☆33Updated last week
• segalab / SGVFinder
  ☆32Updated last year
• MadsAlbertsen / mmgenome
  Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes
  ☆27Updated 7 years ago
• d-mcgrath / MetaPathPredict
  A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.
  ☆16Updated 5 months ago