biovcnet / topic-metagenomics
A repository for the lessons and notebooks used for Binder tutorials
☆19Updated 4 years ago
Alternatives and similar repositories for topic-metagenomics:
Users that are interested in topic-metagenomics are comparing it to the libraries listed below
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Metagenomics Workshop☆28Updated 8 years ago
- Analyses in R and Python Using curatedMetagenomicData☆31Updated 3 weeks ago
- Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset☆20Updated 4 years ago
- ☆15Updated 2 years ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 6 months ago
- MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome☆21Updated this week
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated 3 months ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆28Updated 2 months ago
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆11Updated 2 years ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆14Updated last month
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 4 years ago
- Metagenomics-related extended functionalities to samtools☆21Updated last year
- gutSMASH☆53Updated 4 months ago
- ☆29Updated 3 months ago
- A shiny package for microbiome functional enrichment analysis☆37Updated last week
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆21Updated 3 years ago
- ☆41Updated 4 years ago
- Hands-on workflow for learning metagenomics including DNA mapping, binning, QC and annotation. Answers and example code available in the…☆12Updated 3 years ago
- Improvement of metagenome-assembled genomes☆51Updated 5 years ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- A general metagenomics data mining system focus on robust microbiome research☆57Updated 7 months ago
- repo for cicese metatranscriptomics workshop, nov 2018☆14Updated 5 years ago
- MAG Circularization Method☆33Updated 2 years ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Updated 3 years ago
- Protein Alignment and Detection Interface☆61Updated last year
- Code and manual of the endoR R-package (Ruaud et al, in preparation).☆12Updated last year
- ☆45Updated last year
- A repository for the lessons and notebooks used for Binder tutorials☆13Updated 4 years ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated 2 weeks ago