FredHutch / microbial-rnaseqLinks
Analysis of RNAseq data from (host-associated) microbial mixtures
☆12Updated 6 years ago
Alternatives and similar repositories for microbial-rnaseq
Users that are interested in microbial-rnaseq are comparing it to the libraries listed below
Sorting:
- R Interface to the NCBI SRA metadata☆23Updated 7 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆24Updated last year
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- Short idioms and patterns for transforming, merging and managing files and channels in Nextflow.☆17Updated 5 months ago
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- ☆12Updated 8 years ago
- ☆18Updated 8 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 7 years ago
- A shiny package for microbiome functional enrichment analysis☆38Updated 3 weeks ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 8 months ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated 2 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- 🍶 Genome assembly with short sequence reads☆25Updated last year
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 3 months ago
- UMCU Genetics Nextflow modules☆29Updated last year
- Integrative analysis of structural variations.☆40Updated 2 years ago
- De novo VIral Genome Annotator☆23Updated last week
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 6 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆30Updated 10 months ago
- ClusterScan, search for clusters of features in a given annotation.☆11Updated 4 years ago
- R interface to the JBrowse 2 Linear Genome View.☆39Updated last year
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 5 months ago
- Repository of the integrated mouse gut metagenomic catalog☆20Updated 3 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago