Analysis of RNAseq data from (host-associated) microbial mixtures
☆12Nov 25, 2019Updated 6 years ago
Alternatives and similar repositories for microbial-rnaseq
Users that are interested in microbial-rnaseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- dplyr verbs for clusterProfiler outputs☆13Mar 12, 2020Updated 6 years ago
- Readability enhancement tool for bioinformatics data file format☆29Jan 9, 2020Updated 6 years ago
- supplementary tables and files☆10Oct 13, 2023Updated 2 years ago
- ☆13Mar 17, 2019Updated 7 years ago
- useful functions for ggplot☆18Jul 16, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆13Dec 19, 2018Updated 7 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Dec 3, 2024Updated last year
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Feb 12, 2020Updated 6 years ago
- The repository contains the source code of the NanoForms server (Czmil et al. NanoForms: an integrated server for processing, analysis an…☆11Feb 22, 2023Updated 3 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets☆23Nov 18, 2018Updated 7 years ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆16Oct 11, 2023Updated 2 years ago
- MEGARes and AmrPlusPlus - A comprehensive database of antimicrobial resistance genes and user-friendly pipeline for analysis of high-thro…☆26Nov 14, 2022Updated 3 years ago
- Links to data science, bioinformatics, statistics, and machine learning resources☆18Aug 20, 2020Updated 5 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Microbe-Metabolite INteractions-based metabolic profiles Predictor☆16Mar 17, 2023Updated 3 years ago
- Molecular Signatures Database (MSigDB) in a data frame☆16Dec 3, 2018Updated 7 years ago
- Efficient and comprehensive metadata acquisition from the NCBI databases (includes SRA).☆50May 25, 2022Updated 3 years ago
- 【统计之都&SupStat】R语言春令营☆11Apr 29, 2013Updated 12 years ago
- download files in R using wget -c☆16Aug 20, 2025Updated 7 months ago
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆64Mar 3, 2026Updated 3 weeks ago
- Output FASTQ summary statistics in JSON format☆29Oct 30, 2022Updated 3 years ago
- Ebola virus surveillance☆15Aug 28, 2016Updated 9 years ago
- Guangchuang Yu's CV☆43Feb 2, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Random utility scripts for genomics data☆12Feb 22, 2021Updated 5 years ago
- Common repository for scripts to generate trees from taxonomies. Currently includes ITIS, NCBI, and GBIF.☆16Nov 30, 2015Updated 10 years ago
- In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis☆15Feb 19, 2026Updated last month
- in silico plasmid extraction☆13Sep 18, 2017Updated 8 years ago
- UMCU Genetics Nextflow modules☆30Oct 25, 2024Updated last year
- Phylogenetic Isometric Log Ratio☆19Oct 15, 2024Updated last year
- Short idioms and patterns for transforming, merging and managing files and channels in Nextflow.☆17Jul 27, 2025Updated 8 months ago
- Visualization tool for genetic reassortment☆21Nov 1, 2025Updated 4 months ago
- real-time stream processing of DNA nanopore sequencer reads with dataflow☆27Jan 9, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Grammar of Graphics for base plot☆52Jan 30, 2026Updated last month
- StaG Metagenomic Workflow Collaboration☆28Aug 20, 2024Updated last year
- ☆18Jul 9, 2018Updated 7 years ago
- rapidly rid reads of horrid humans☆15Dec 2, 2021Updated 4 years ago
- ☆26Jan 31, 2026Updated last month
- Maximum Likelihood Amplicon Pipeline☆22May 22, 2024Updated last year
- The MLST pipeline developed by the PathOGiST research group☆36Nov 29, 2023Updated 2 years ago