FredHutch / microbial-rnaseqLinks
Analysis of RNAseq data from (host-associated) microbial mixtures
☆12Updated 5 years ago
Alternatives and similar repositories for microbial-rnaseq
Users that are interested in microbial-rnaseq are comparing it to the libraries listed below
Sorting:
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- ClusterScan, search for clusters of features in a given annotation.☆11Updated 3 years ago
- Merge transcriptome assemblies☆31Updated 8 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 4 years ago
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Trimming tool for Oxford Nanopore sequence data☆21Updated 4 years ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 6 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 2 months ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- De novo VIral Genome Annotator☆23Updated 10 months ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆21Updated last year
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- Talk to the NCBI EUtils☆22Updated 4 years ago
- ☆19Updated 8 years ago
- Teaching modules for Human Genome Variation Lab.☆20Updated 2 months ago
- Integrative analysis of structural variations.☆40Updated last year
- Nanopore Real-Time Analysis Tool☆15Updated 11 months ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆17Updated 3 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- full taxonomer cython repository☆22Updated 5 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated last week
- Unfazed by genomic variant phasing☆27Updated last year
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 3 years ago
- Evolutionary Transcriptomics with R☆45Updated this week