Alternatives and similar repositories for functree-ng:

Users that are interested in functree-ng are comparing it to the libraries listed below

• microbiome / mia
  Microbiome analysis
  ☆51Updated this week
• biobakery / melonnpan
  Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles
  ☆35Updated last year
• SchlossLab / Sze_Obesity_mBio_2016
  ☆12Updated 7 years ago
• tpq / propr
  [OFFICIAL] [CoDA] An R package to calculate proportionality and other measures for compositional data
  ☆71Updated 2 months ago
• EESI / themetagenomics
  ☆23Updated 4 years ago
• databio2022 / GraphBio
  GraphBio: a shiny web app to easily perform popular visualization analysis for omics data
  ☆33Updated last year
• OHMI-ontology / OHMI
  OHMI: The Ontology of Host-Microbiome Interactions
  ☆12Updated 3 years ago
• pcastellanoescuder / POMA
  Omics Data Analysis Tools
  ☆11Updated 5 months ago
• lvulliard / BioCircos.R
  Htmlwidgets binding R commands to the BioCircos.js library
  ☆38Updated 5 years ago
• cytoscape / RCy3
  New version of RCy3, redesigned and collaboratively maintained by Cytoscape developer community
  ☆52Updated last week
• Gibbons-Lab / mbtools
  R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.
  ☆23Updated last year
• ruochenj / mbImpute
  mbImpute: an accurate and robust imputation method for microbiome data
  ☆10Updated 3 years ago
• YuLab-SMU / treedata-book
  a complete reference book for treeio, tidytree and ggtree packages
  ☆104Updated 2 years ago
• cxli233 / ggpathway
  A tutorial for pathway visualization using tidyverse, igraph, and ggraph
  ☆57Updated 6 months ago
• spholmes / F1000_workflow
  ☆43Updated 7 years ago
• vallenderlab / MicrobiomeR
  A comprehensive and customizable R package for microbiome analysis.
  ☆23Updated 2 years ago
• wejlab / animalcules
  R shiny app for interactive microbiome analysis
  ☆55Updated last year
• YuLab-SMU / meshes
  MeSH Enrichment and Semantic analyses
  ☆12Updated last week
• PennChopMicrobiomeProgram / ZIBR
  Zero-Inflated Beta Random Effect model
  ☆30Updated last year
• jgolob / maliampi
  Maximum Likelihood Amplicon Pipeline
  ☆22Updated 11 months ago
• b2slab / FELLA
  FELLA: an R package for Metabolomics data enrichment through diffusion
  ☆22Updated 4 years ago
• Gibbons-Lab / isb_course_2020
  Materials and tutorials for the 2020 ISB Microbiome Course
  ☆30Updated 2 years ago
• lindsayrutter / bigPint
  Bioconductor package that makes BIG data pint-sized.
  ☆21Updated last year
• victoriapascal / gutsmash
  gutSMASH
  ☆53Updated 4 months ago
• zellerlab / siamcat
  R package for Statistical Inference of Associations between Microbial Communities And host phenoType
  ☆52Updated last year
• microsud / dysbiosisR
  The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures
  ☆15Updated 2 years ago
• krisrs1128 / multitable_review
  Code to accompany "Multitable Methods for Microbiome Data Integration"
  ☆9Updated 5 years ago
• sk-sahu / sig-bio-shiny
  A standalone interactive application for detecting biological significance on a set of genes
  ☆40Updated 3 years ago
• microbiome / tutorials
  Tutorials
  ☆14Updated 3 years ago
• katrikorpela / mare
  Microbiota Analysis in R Easily
  ☆11Updated 2 years ago