☆25Oct 26, 2021Updated 4 years ago
Alternatives and similar repositories for fastDNA
Users that are interested in fastDNA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- [Archived] SnakeMake pipeline to run BlobTools on public assemblies☆11Jul 3, 2023Updated 2 years ago
- ☆17Oct 7, 2024Updated last year
- python script to programmatically enrich your data using Enrichr API☆12Jul 5, 2017Updated 8 years ago
- Fast and accurate set similarity estimation via containment min hash☆42Jul 19, 2024Updated last year
- ☆14Jan 31, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆12Sep 7, 2019Updated 6 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- ☆11Sep 28, 2017Updated 8 years ago
- ☆21Mar 19, 2025Updated last year
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- ☆42Apr 2, 2024Updated 2 years ago
- Computation of average nucleotide identity with the use of MMseqs2☆16Dec 11, 2024Updated last year
- Fast pairwise transmission inference from single genome and/or metagenomic data☆24Aug 1, 2025Updated 8 months ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Aug 9, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Phylogenetic Placement Evaluation Workflows : Benchmark placement software and different reference trees☆13Jan 31, 2025Updated last year
- Removing PCR duplicates for sequencing reads.☆14Sep 8, 2020Updated 5 years ago
- Rapid estimation of phylogenetic trees using sketching☆13Feb 18, 2025Updated last year
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 5 years ago
- ☆62Sep 15, 2025Updated 7 months ago
- Microbial agile accurate SNP Typer☆30Dec 27, 2023Updated 2 years ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 5 months ago
- Training scripts for BERTax☆12Jun 12, 2024Updated last year
- A toolkit for exploring regions of variation in pangenomes☆14Feb 14, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- A nextflow version of the Wochenende reference metagenome binning and visualization pipeline☆16Mar 4, 2026Updated last month
- Accurate contamination removal using locality-sensitive hashing☆14Jul 8, 2023Updated 2 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆29Jan 29, 2025Updated last year
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆34Mar 30, 2026Updated 2 weeks ago
- Efficient phylogenetic tree inference for massive taxonomic datasets☆142Apr 6, 2025Updated last year
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- ☆19May 10, 2023Updated 2 years ago
- Population genetics analysis on VG☆17Apr 22, 2021Updated 4 years ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Pan-Genomic Matching Statistics☆56Apr 3, 2024Updated 2 years ago
- Giraffe_View is designed to help assess and visualize the accuracy of long-read sequencing datasets.☆13Sep 3, 2024Updated last year
- ☆18Jun 11, 2024Updated last year
- SV genotyper for long reads with a variation graph☆16Aug 11, 2025Updated 8 months ago
- A command line program for large scale buffering between piped programs