rmenegaux / fastDNALinks
☆25Updated 4 years ago
Alternatives and similar repositories for fastDNA
Users that are interested in fastDNA are comparing it to the libraries listed below
Sorting:
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Updated 3 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- A repository for the GenGraph toolkit for the creation and manipulation of graph genomes☆51Updated 4 years ago
- Simple and efficient access to genomic data for deep learning models.☆42Updated 5 years ago
- A comprehensive gene set function enrichment tool for multiple species.☆14Updated 5 years ago
- GRAph-based Finding of Individual Motif Occurrences☆31Updated last year
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆38Updated 8 years ago
- FFPopSim is a collection of C++ classes and a Python interface for efficient simulation of large populations, in particular when the prod…☆14Updated last month
- SPRUCE: Somatic Phylogeny Reconstruction using Combinatorial Enumeration☆14Updated 7 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Updated last year
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Updated 4 years ago
- Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere☆24Updated 2 weeks ago
- Boiler: a software tool for highly efficient, lossy compression of RNA-seq alignments☆13Updated 9 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Updated 3 years ago
- Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding☆12Updated 4 years ago
- Fishers Exact Test for Python (Cython)☆66Updated 8 months ago
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆22Updated 2 years ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆35Updated last year
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆15Updated 7 years ago
- provides common tools and lookup tables used primarily by the hgvs and uta packages☆23Updated 3 months ago
- A python library for creating simulated regulatory DNA sequences☆39Updated 2 years ago
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆34Updated 2 years ago
- ☆10Updated 3 years ago
- Genetics training camp☆21Updated 5 years ago
- Bioinformatics Open Source Sequence machine☆32Updated 2 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆46Updated 2 years ago
- An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms☆18Updated 5 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago
- Accompanying repository for GkmExplain paper☆23Updated 5 years ago
- Tissue-specific variant effect predictions on splicing☆42Updated 2 years ago