Alternatives and similar repositories for rnacocktail:

Users that are interested in rnacocktail are comparing it to the libraries listed below

• MonashBioinformaticsPlatform / RSeQC
  fork of RSeQC python RNAseq metrics suit of tools
  ☆48Updated 5 years ago
• tderrien / FEELnc
  FEELnc : FlExible Extraction of LncRNA
  ☆84Updated 4 months ago
• guoweilong / cgmaptools
  toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR
  ☆62Updated last year
• Tong-Chen / NGS
  Scripts for next generation sequencing
  ☆48Updated 5 years ago
• BSSeeker / BSseeker2
  A versatile aligning pipeline for bisulfite sequencing data
  ☆64Updated 6 years ago
• xuzhougeng / R-ChIP-data-analysis
  ☆51Updated 6 years ago
• marvin-jens / find_circ
  tools to find circRNAs in RNA-seq data
  ☆40Updated 7 years ago
• FoundationMedicineInc / SGZ
  ☆38Updated 11 months ago
• csf-ngs / fastqc
  csf fork of fastqc for usage on selected reads of unaligned bam file
  ☆49Updated 11 years ago
• bahlolab / bioinfotools
  Documenting usage and experience with bioinformatic tools
  ☆40Updated 9 years ago
• www-bioinfo-org / CNCI
  Coding-Non-Coding Index (CNCI)
  ☆38Updated 6 years ago
• FelixKrueger / SNPsplit
  Allele-specific alignment sorting
  ☆54Updated 2 years ago
• ding-lab / MuSiC2
  identifying mutational significance in cancer genomes
  ☆60Updated 2 years ago
• ccagc / QDNAseq
  QDNAseq package for Bioconductor
  ☆49Updated 5 months ago
• likelet / LncPipe
  A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets
  ☆83Updated 2 years ago
• smithlabcode / methpipe
  A pipeline for analyzing DNA methylation data from bisulfite sequencing.
  ☆69Updated 2 years ago
• niu-lab / msisensor2
  Microsatellite instability (MSI) detection for tumor only data.
  ☆97Updated 8 months ago
• CenterForMedicalGeneticsGhent / WisecondorX
  WisecondorX — An evolved WISECONDOR
  ☆94Updated 4 months ago
• dinhdiep / MONOD2
  MONOD2 is a toolkit for methylation haplotype analysis of bisulfite sequencing data
  ☆36Updated 5 years ago
• gatk-workflows / gatk4-exome-analysis-pipeline
  This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…
  ☆51Updated 4 years ago
• yezhengSTAT / CUTTag_tutorial
  Tutorial Website
  ☆55Updated 3 years ago
• geocarvalho / sv-cnv-studies
  Relevant papers for CNV and SV approaches
  ☆94Updated 2 months ago
• nloyfer / UXM_deconv
  ☆40Updated 2 years ago
• morrislab / qapa
  RNA-seq Quantification of Alternative Polyadenylation
  ☆45Updated last year
• AstraZeneca-NGS / reference_data
  Reference data: BED files, genes, transcripts, variations.
  ☆82Updated 7 years ago
• iprada / Circle-Map
  A method for circular DNA detection based on probabilistic mapping of ultrashort reads
  ☆61Updated 6 months ago
• ENCODE-DCC / dna-me-pipeline
  DCC/DAC methylation pipeline source
  ☆55Updated 4 years ago
• KCCG / ClinSV
  Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data
  ☆66Updated 4 months ago
• BioinfoUNIBA / REDItools2
  ☆53Updated 3 years ago