☆89Nov 11, 2020Updated 5 years ago
Alternatives and similar repositories for rnacocktail
Users that are interested in rnacocktail are comparing it to the libraries listed below
Sorting:
- ☆22Feb 5, 2025Updated last year
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆13Nov 12, 2019Updated 6 years ago
- LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning☆29Jun 4, 2018Updated 7 years ago
- ☆21May 27, 2024Updated last year
- Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.☆148Aug 30, 2021Updated 4 years ago
- Gordon's Text utils Library☆10Apr 11, 2022Updated 3 years ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆71Oct 7, 2022Updated 3 years ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆92Apr 30, 2021Updated 4 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆15Jun 12, 2022Updated 3 years ago
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆26Jul 30, 2022Updated 3 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Nov 27, 2024Updated last year
- a lightweight bam file depth statistical tool☆161Sep 13, 2024Updated last year
- A mosaic detecting software based on phasing and random forest☆70Dec 8, 2025Updated 2 months ago
- A simplified pipeline for ctDNA sequencing data analysis☆37Sep 23, 2017Updated 8 years ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆59Nov 18, 2022Updated 3 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Nov 26, 2019Updated 6 years ago
- genome basic statistics tool (e.g. n50, n10, ng50,...)☆15Mar 5, 2012Updated 13 years ago
- ☆39Apr 25, 2023Updated 2 years ago
- Gene fusion detection and visualization☆131Feb 21, 2022Updated 4 years ago
- Calculates the Variant Allele Fraction of variants in VCF files☆19Nov 28, 2024Updated last year
- Bedfile perturbation tool☆17Sep 29, 2025Updated 5 months ago
- Search for activating regulatory variants in the tumor genome☆14Apr 11, 2025Updated 10 months ago
- 肿瘤突变负荷学习笔记(tumor mutation burden)☆16Dec 10, 2019Updated 6 years ago
- NGS perl modules☆11Updated this week
- Whole genome workflows☆12Nov 9, 2024Updated last year
- Mutational Signature Comprehensive Analysis Toolkit☆15Feb 19, 2026Updated last week
- This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…☆12Jun 21, 2024Updated last year
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified…☆22Oct 27, 2021Updated 4 years ago
- ☆23Oct 30, 2022Updated 3 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 2 months ago
- ☆31Nov 25, 2019Updated 6 years ago
- ☆445Jun 15, 2020Updated 5 years ago
- A tool to detect postzygotic single-nucleotide mosaicism from unpaired, trio, or paired samples.☆13Feb 23, 2021Updated 5 years ago
- Detect and visualize microsatellite instability(MSI) from NGS data☆32Jun 4, 2019Updated 6 years ago
- Count bases in BAM/CRAM files☆324Jan 31, 2022Updated 4 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Jun 23, 2016Updated 9 years ago