bioinform / rnacocktail
☆89Updated 4 years ago
Alternatives and similar repositories for rnacocktail:
Users that are interested in rnacocktail are comparing it to the libraries listed below
- toolbox for analysing BS-seq data, advance features in SNV, ASM and DMR☆62Updated last year
- Coding-Non-Coding Index (CNCI)☆39Updated 7 years ago
- csf fork of fastqc for usage on selected reads of unaligned bam file☆49Updated 12 years ago
- MONOD2 is a toolkit for methylation haplotype analysis of bisulfite sequencing data☆38Updated 6 years ago
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- Allele-specific alignment sorting☆54Updated 2 years ago
- A versatile aligning pipeline for bisulfite sequencing data☆65Updated 6 years ago
- FEELnc : FlExible Extraction of LncRNA☆85Updated 5 months ago
- tools to find circRNAs in RNA-seq data☆42Updated 7 years ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago
- identifying mutational significance in cancer genomes☆60Updated 2 years ago
- Scripts for next generation sequencing☆48Updated 5 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆52Updated 4 years ago
- A simplified pipeline for ctDNA sequencing data analysis☆36Updated 7 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆101Updated 10 months ago
- Reference data: BED files, genes, transcripts, variations.☆82Updated 7 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆61Updated 7 months ago
- ☆51Updated 6 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 3 years ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆55Updated 4 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆70Updated 2 years ago
- HMMRATAC peak caller for ATAC-seq data☆100Updated 3 months ago
- Next-Generation Sequencing(NGS) toolkits.☆45Updated 8 years ago
- A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …☆60Updated 5 years ago
- A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets☆82Updated 2 years ago
- piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School☆57Updated 8 months ago
- ☆40Updated last year
- DCC/DAC methylation pipeline source☆55Updated 4 years ago
- ☆32Updated 7 years ago