alyssafrazee / ballgownLinks
Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.
☆148Updated 4 years ago
Alternatives and similar repositories for ballgown
Users that are interested in ballgown are comparing it to the libraries listed below
Sorting:
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆165Updated 2 years ago
- Practical, reusable scripts for bioinformatics☆102Updated 6 years ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆255Updated 6 months ago
- Automatically exported from code.google.com/p/ea-utils☆96Updated 2 years ago
- Windowed Adaptive Trimming for fastq files using quality☆226Updated 8 years ago
- Discovering known and novel miRNAs from small RNA sequencing data☆158Updated last month
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆97Updated 3 months ago
- GATK RNA-Seq Variant Calling in Nextflow☆137Updated 3 years ago
- SV detection from paired end reads mapping☆118Updated 6 years ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆176Updated last year
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆129Updated 5 years ago
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 3 years ago
- Documentation and description of AWS iGenomes S3 resource.☆120Updated last year
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆135Updated last year
- A short tutorial on how to use RSEM☆139Updated 5 years ago
- miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.☆182Updated 7 years ago
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆212Updated 5 years ago
- BEDOPS: high-performance genomic feature operations☆357Updated 8 months ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆195Updated 3 weeks ago
- Next-Generation Sequencing(NGS) toolkits.☆48Updated 9 years ago
- PAired-eND Assembler for DNA sequences☆137Updated 5 years ago
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆145Updated 9 years ago
- Count bases in BAM/CRAM files☆323Updated 3 years ago
- VarDict☆201Updated 2 years ago
- Plugins for the Ensembl Variant Effect Predictor (VEP)☆164Updated last week
- ☆157Updated 8 months ago
- Intervene: a tool for intersection and visualization of multiple genomic region and gene sets☆143Updated 2 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆175Updated last year
- Biopieces is a bioinformatic framework of tools easily used and easily created.☆144Updated 7 years ago