alyssafrazee / ballgown
Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.
☆141Updated 3 years ago
Related projects: ⓘ
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆199Updated 2 months ago
- Practical, reusable scripts for bioinformatics☆97Updated 5 years ago
- Discovering known and novel miRNAs from small RNA sequencing data☆135Updated 3 weeks ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆152Updated last year
- A short tutorial on how to use RSEM☆132Updated 4 years ago
- Automatically exported from code.google.com/p/ea-utils☆95Updated last year
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 6 years ago
- NGS-pipe: next-generation sequencing pipelines for precision oncology☆106Updated 5 years ago
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆205Updated 4 years ago
- A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets☆83Updated last year
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆187Updated 2 months ago
- RNA-Seq analysis workflow☆103Updated 3 years ago
- Next-Generation Sequencing(NGS) toolkits.☆44Updated 8 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆120Updated 4 years ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆160Updated 2 months ago
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel☆137Updated this week
- GATK RNA-Seq Variant Calling in Nextflow☆131Updated last year
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆146Updated 3 weeks ago
- Genomic Interactive Visualization Engine☆143Updated last year
- VCF-kit: Assorted utilities for the variant call format☆121Updated last month
- structural variant calling and genotyping with existing tools, but, smoothly.☆230Updated 3 months ago
- Copy number calling and variant classification using targeted short read sequencing☆127Updated last week
- ☆81Updated 5 years ago
- GWAS Pipeline for H3Africa☆104Updated this week
- ☆80Updated this week
- VarDict☆187Updated 8 months ago
- Simple FASTQ quality assessment using Python☆108Updated 3 years ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆209Updated 11 months ago
- Finder of Somatic Fusion Genes in RNA-seq data☆141Updated last year
- Learning the Variant Call Format☆137Updated 5 months ago