Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.
☆148Aug 30, 2021Updated 4 years ago
Alternatives and similar repositories for ballgown
Users that are interested in ballgown are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆270Mar 15, 2026Updated last month
- Transcript assembly and quantification for RNA-Seq☆502Dec 26, 2025Updated 3 months ago
- TransDecoder source☆304Mar 22, 2026Updated 3 weeks ago
- ☆89Nov 11, 2020Updated 5 years ago
- Trinity RNA-Seq de novo transcriptome assembly☆888Feb 7, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆470Apr 7, 2026Updated last week
- Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis inclu…☆1,420May 31, 2023Updated 2 years ago
- PHAST☆83Feb 20, 2026Updated last month
- GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF☆19Oct 30, 2020Updated 5 years ago
- Gordon's Text utils Library☆10Apr 11, 2022Updated 4 years ago
- SeqOthello supports fast coverage query and containment query.☆12May 8, 2019Updated 6 years ago
- Differential analysis of RNA-Seq☆312May 28, 2025Updated 10 months ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32May 31, 2016Updated 9 years ago
- a pipeline to process data of PEM-seq or data similar, which is more comprehensive than superQ☆10Feb 24, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Graph-based alignment (Hierarchical Graph FM index)☆532Jan 27, 2026Updated 2 months ago
- A Nextflow implementation of the Tuxedo Suite of Tools: HISAT, StringTie & Ballgown☆10Apr 2, 2018Updated 8 years ago
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆876Mar 11, 2026Updated last month
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆16Apr 12, 2014Updated 12 years ago
- Near-optimal RNA-Seq quantification☆756Mar 16, 2026Updated last month
- PASA software☆199Feb 12, 2025Updated last year
- Tool for the detection and quantification of alternative splicing events from RNA-Seq data.☆111Updated this week
- ☆12Jun 12, 2023Updated 2 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Mar 20, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆136Jan 28, 2026Updated 2 months ago
- Q ChIP-seq peak caller☆18Jul 17, 2024Updated last year
- Download binary executables and sample data here:☆18Oct 28, 2016Updated 9 years ago
- stageR package☆13Feb 28, 2023Updated 3 years ago
- Simple and quick FastQ and FastA tool for file reading and conversion☆17Jul 11, 2014Updated 11 years ago
- Rcount: simple and flexible RNA-Seq read counting☆12May 19, 2022Updated 3 years ago
- Ritornello is a high fidelity control free ChIP-seq peak calling algorithm☆13Aug 23, 2018Updated 7 years ago
- A tool for Read Multi-Mapper Resolution☆24Feb 15, 2017Updated 9 years ago
- Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny☆20Jan 15, 2020Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- flexible barcode and adapter removal☆80Feb 10, 2023Updated 3 years ago
- Latest MOCAT2 version☆18Mar 8, 2021Updated 5 years ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆511Feb 26, 2026Updated last month
- FASTA/FASTQ pre-processing programs☆200Mar 4, 2022Updated 4 years ago
- ChIP-seq DC and QC Pipeline☆36Mar 19, 2021Updated 5 years ago
- ☆321Mar 31, 2020Updated 6 years ago
- MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation☆140Dec 15, 2022Updated 3 years ago