Function prediction using a deep ontology-aware classifier
☆87Nov 21, 2022Updated 3 years ago
Alternatives and similar repositories for deepgo
Users that are interested in deepgo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- DeepGO with GOPlus axioms☆103Oct 23, 2025Updated 5 months ago
- A Deep Learning Model for Protein Function Prediction☆18Jul 31, 2020Updated 5 years ago
- Graph-based representation learning method for protein function prediction☆24Aug 25, 2025Updated 7 months ago
- DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction☆35Jul 28, 2021Updated 4 years ago
- DeepGO with Fuzzy DL☆34Sep 19, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆57Sep 11, 2024Updated last year
- Transformer-based protein function Annotation with joint feature-Label Embedding☆37Dec 18, 2024Updated last year
- Source code for the DeepViral paper☆11Mar 17, 2021Updated 5 years ago
- This is the repository for PIPR. This repository contains the source code and links to some datasets used in the ISMB/ECCB-2019 paper "Mu…☆111Jan 14, 2023Updated 3 years ago
- ☆25Apr 27, 2022Updated 3 years ago
- Matlab Evaluation codes for the 2nd CAFA experiment☆14Nov 27, 2023Updated 2 years ago
- ☆17Jul 29, 2021Updated 4 years ago
- Unsupervised neural network for learning embeddings of GO terms.☆21Feb 19, 2022Updated 4 years ago
- A Heterogeneous Graph Transformer (HGT)-based model for protein function prediction using biological knowledge graphs and protein languag…☆18Jan 27, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Transformer for protein function prediction (version 2)☆14Jan 8, 2026Updated 3 months ago
- Improving protein function prediction with synthetic feature samples created by generative adversarial networks☆22Oct 6, 2020Updated 5 years ago
- Novel joint clustering method with scRNA-seq and CITE-seq data☆10Jun 22, 2021Updated 4 years ago
- S2F: protein function without experiments☆16Nov 24, 2025Updated 4 months ago
- generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions.☆16Oct 19, 2019Updated 6 years ago
- PLAID (Plate Layouts using Artificial Intelligence Design) is a flexible constraint-programming model representing the Plate Layout Desig…☆17Nov 27, 2025Updated 4 months ago
- Codes and results from ONT dRNA benchmarking☆11Nov 28, 2023Updated 2 years ago
- Method for constructing embeddings of GO terms.☆14Nov 25, 2021Updated 4 years ago
- Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format☆21Oct 15, 2010Updated 15 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Code of our JC paper: "Structure-aware protein solubility prediction from sequence through graph convolutional network and predicted cont…☆76Mar 1, 2022Updated 4 years ago
- Phenotype-based Diagnosis Tool for Rare Diseases☆13Mar 2, 2026Updated last month
- Curated list of resources for variant prioritization☆15Nov 18, 2025Updated 5 months ago
- ARCHIVED: this has been folded into the owlapi☆11Oct 27, 2020Updated 5 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆14Mar 12, 2021Updated 5 years ago
- A metatranscriptomic pipeline optimized for the study of microeukaryotes.☆17Dec 30, 2025Updated 3 months ago
- NLP for Proteins - A paper collection☆13Sep 10, 2020Updated 5 years ago
- catELMo: Context-Aware Amino Acid Embedding Advances Analysis of TCR-Epitope Interactions☆15Apr 10, 2025Updated last year
- An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms☆19Mar 23, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code for paper titled, "Beyond Homology Transfer: Deep Learning for Automated Annotation of Proteins". Preprint available at: http://www.…☆19Jul 26, 2017Updated 8 years ago
- A Python API and a command-line tool for the Tree of Life☆17Aug 28, 2020Updated 5 years ago
- ☆22Mar 6, 2024Updated 2 years ago
- Multi-label subcellular localization and sorting signal prediction based on protein foundation models☆24Jan 12, 2026Updated 3 months ago
- Prediction of protein substitution impact using a directional substitution matrix and homolog alignments☆12Oct 25, 2021Updated 4 years ago
- Fast and accurate protein function prediction from sequence through pretrained language model and homology-based label diffusion☆45Jul 27, 2024Updated last year
- Data exploration with multiple machine learning algorithms☆14Nov 28, 2021Updated 4 years ago