bio-ontology-research-group / deepgoLinks
Function prediction using a deep ontology-aware classifier
☆84Updated 2 years ago
Alternatives and similar repositories for deepgo
Users that are interested in deepgo are comparing it to the libraries listed below
Sorting:
- DeepGO with GOPlus axioms☆94Updated last year
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- ☆23Updated 2 years ago
- ☆48Updated 9 months ago
- ☆58Updated 8 years ago
- A deep learning framework for high-throughput mechanism-driven phenotype screening☆50Updated 4 years ago
- Machine learning workflows for analyzing high-throughput protein data☆26Updated 8 years ago
- Python package and command line tool for epitope prediction☆52Updated last year
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆49Updated last year
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆66Updated 3 years ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Updated 6 years ago
- Network-based project to explore gene connectivity through biological scales☆23Updated 10 months ago
- Protein sequence classification with self-supervised pretraining☆82Updated 3 years ago
- MHC-peptide class II interaction prediction, binding, presentation☆23Updated 3 years ago
- Comprehensive Python client for the Uniprot REST API☆50Updated 2 months ago
- Code for reproducing results of "Unsupervised embeddings is all you need for protein function prediction"☆41Updated 2 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 8 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆72Updated 2 years ago
- PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…☆52Updated last month
- Transformer-based protein function Annotation with joint feature-Label Embedding☆35Updated 8 months ago
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆67Updated 2 years ago
- ☆21Updated 2 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Updated 3 years ago
- Amino Acid Embedding Representation as Machine Learning Features☆19Updated 7 years ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆49Updated last year
- Modelling the Language of Life - Deep Learning Protein Sequences☆74Updated 4 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆50Updated 6 years ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆68Updated 3 years ago
- Evolutionary velocity with protein language models☆94Updated last year
- ☆26Updated 5 years ago