Code of our JC paper: "Structure-aware protein solubility prediction from sequence through graph convolutional network and predicted contact map"
☆77Mar 1, 2022Updated 4 years ago
Alternatives and similar repositories for GraphSol
Users that are interested in GraphSol are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Sequence-based protein solubility prediction using multidimensional embedding☆13Apr 19, 2021Updated 5 years ago
- Protein-protein interacting site predictor using deep graph convolutional network☆11Jan 3, 2023Updated 3 years ago
- ☆11Jan 2, 2021Updated 5 years ago
- Sequence-based protein solubility predictor☆11Apr 1, 2020Updated 6 years ago
- ☆57Aug 3, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- GATSol, an enhanced predictor of protein solubility through the synergy of 3D structure information and large language modeling☆20Sep 7, 2024Updated last year
- Template with code & dataset for the "Structural basis for solubility in protein expression systems" challenge at the Copenhagen Bioinfor…☆24Apr 25, 2021Updated 5 years ago
- An evolutionary context-integrated deep learning framework for protein engineering☆71Jun 1, 2022Updated 4 years ago
- LMetalSite: alignment-free metal ion-binding site prediction from protein sequence through pretrained language model and multi-task learn…☆19Oct 23, 2025Updated 10 months ago
- open source repository☆149Nov 30, 2023Updated 2 years ago
- The official repository for TherML - a machine learning approach to predict scFv and antibody thermostability☆15Sep 8, 2023Updated 2 years ago
- The standalone version / cli-tool of SPOT-Contact-Single available for public use for research purposes.☆16Feb 1, 2024Updated 2 years ago
- A package to predict protein inter-residue geometries from sequence data☆222Sep 27, 2021Updated 4 years ago
- Predicts the solubility and usability for purification of proteins expressed in E. coli using protein language models☆50Dec 16, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆38Nov 7, 2024Updated last year
- PyTorch code for KDD 2023 paper "Pre-training Antibody Language Models for Antigen-Specific Computational Antibody Design"☆56Nov 14, 2023Updated 2 years ago
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆97Jul 20, 2026Updated last month
- SGPPI: structure-aware prediction of protein-protein interactions in rigorous conditions with graph convolutional network☆15Nov 17, 2022Updated 3 years ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Feb 21, 2026Updated 6 months ago
- deep protein solubility prediction☆41May 12, 2019Updated 7 years ago
- Repository for publicly available deep learning models developed in Rosetta community☆123Sep 18, 2021Updated 4 years ago
- ☆34Feb 5, 2025Updated last year
- ☆11Mar 28, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Computer aided proximal decaging as a universal strategy for temporal protein activation☆28May 26, 2025Updated last year
- ☆160Jul 28, 2026Updated last month
- Code of our IJCAI2021 paper: "Learning Attributed Graph Representation with Communicative Message Passing Transformer"☆39Mar 19, 2022Updated 4 years ago
- ☆27May 9, 2022Updated 4 years ago
- Fast and easy contact prediction.☆38May 24, 2024Updated 2 years ago
- GRACE: Generative Renaissance in Artificial Computational Enzyme Design☆19Jan 8, 2025Updated last year
- 📈 Fusion of sequence, structure and feature information to improve protein solubility prediction (IEEE BIBM 2024).☆36May 16, 2025Updated last year
- DSResSol: A sequence-based solubility predictor created with Dilated Squeeze Excitation Residual Networks☆12May 30, 2024Updated 2 years ago
- ☆10Sep 13, 2021Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- MONN: a Multi-Objective Neural Network for Predicting Pairwise Non-Covalent Interactions and Binding Affinities between Compounds and Pro…☆105Oct 6, 2020Updated 5 years ago
- Extract ligand binding sites from PDB. Match the binding sites to de novo scaffolds.☆13Dec 29, 2020Updated 5 years ago
- Improving protein function prediction with synthetic feature samples created by generative adversarial networks☆22Oct 6, 2020Updated 5 years ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆264Mar 26, 2026Updated 5 months ago
- ☆17Mar 26, 2024Updated 2 years ago
- A web based application predicts water solubility of any given chemical compound known or unknown☆14Jul 4, 2021Updated 5 years ago
- ☆31Feb 22, 2022Updated 4 years ago