jcchan23 / GraphSol
Code of our JC paper: "Structure-aware protein solubility prediction from sequence through graph convolutional network and predicted contact map"
☆72Updated 2 years ago
Alternatives and similar repositories for GraphSol:
Users that are interested in GraphSol are comparing it to the libraries listed below
- Pro-FSFP: Few-Shot Protein Fitness Prediction☆73Updated last month
- ☆61Updated last week
- pyFoldX: python bindings for FoldX.☆44Updated 3 years ago
- [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design☆48Updated last week
- A Python 3 version of the protein descriptor package propy☆40Updated 2 years ago
- ☆68Updated 4 years ago
- ☆79Updated 2 years ago
- ☆35Updated last year
- Rosetta Funclib☆21Updated 4 years ago
- ☆100Updated 2 years ago
- ☆72Updated last week
- ☆31Updated last year
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆27Updated last month
- A variational autoencoder that directly generates the 3D coordinates of immunoglobulin protein backbones.☆27Updated 2 years ago
- Transformer Based Language Model for Peptide Property Prediction☆37Updated 6 months ago
- Official repo of "CarsiDock: a deep learning paradigm for accurate protein–ligand docking and screening based on large-scale pre-training…☆75Updated 6 months ago
- A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons☆34Updated 2 years ago
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆89Updated this week
- ☆46Updated last week
- Pretrainable geometric graph neural network for antibody affinity maturation☆45Updated 6 months ago
- Computer aided proximal decaging as a universal strategy for temporal protein activation☆22Updated 5 years ago
- Nature Computational Science: RhoDesign is a structure-to-sequence model for RNA design.☆28Updated 3 months ago
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆34Updated last year
- ☆28Updated 2 months ago
- NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.☆32Updated 9 months ago
- The standalone version / cli-tool of SPOT-Contact-Single available for public use for research purposes.☆15Updated last year
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion.☆34Updated last month
- Antibody-Antigen Docking and Affinity Benchmark☆69Updated 4 years ago
- a deep learning architecture for protein-ligand binding affinity prediction☆71Updated last year
- DeepRMSD+Vina is a computational framework that integrates ligand binding pose optimization and screening.☆39Updated last year