Source code for the DeepViral paper
☆12Mar 17, 2021Updated 5 years ago
Alternatives and similar repositories for DeepViral
Users that are interested in DeepViral are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Convert Description Logic axioms into a graph, and generate embedding representation for the nodes.☆20Mar 5, 2023Updated 3 years ago
- Web scraper for UniProt and iPTMnet database☆10Jul 12, 2018Updated 8 years ago
- Codes and results from ONT dRNA benchmarking☆12Nov 28, 2023Updated 2 years ago
- breakfast is a simple and fast tool for clustering SARS-CoV-2 genomes using precalculated sequence features (e.g. nucleotide substitution…☆11Aug 1, 2026Updated 2 weeks ago
- Wrapper to read fast5, slow5, blow5 and pod5 files.☆13Mar 26, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- End-to-end simulation of nanopore sequencing signals with feed-forward transformers☆17Jun 4, 2026Updated 2 months ago
- Code and data used in Mollentze et al. (2021) "Identifying and prioritizing potential human-infecting viruses from their genome sequences…☆19Apr 15, 2026Updated 4 months ago
- ☆12Mar 29, 2025Updated last year
- ☆15Nov 16, 2023Updated 2 years ago
- Predict prokaryotic hosts for phage (meta) genomic sequences☆11Apr 4, 2022Updated 4 years ago
- A Weighted GCN with Logical Adjacency Matrix for Relation Extraction (ECAI2020)☆14Jan 24, 2021Updated 5 years ago
- Scipy main repository☆23Updated this week
- metagenome population recombination rate estimation pipeline☆12Nov 23, 2025Updated 8 months ago
- This is a deep learning method for identification of viral contigs with short length from metagenomic data.☆10Dec 20, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Motif Transformers for Predicting Protein-Protein Interactions Between a Novel Virus and Humans☆10Dec 4, 2024Updated last year
- HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.☆10Apr 22, 2024Updated 2 years ago
- BertSNR: an interpretable deep learning framework for single nucleotide resolution identification of transcription factor binding sites b…☆13May 27, 2025Updated last year
- Phage virion protein classifier☆14Nov 6, 2024Updated last year
- G-K BertDTA is a research tool facilitating drug-target interaction prediction. Leveraging multi-modal data integration and advanced mach…☆13Nov 22, 2023Updated 2 years ago
- ☆12May 31, 2024Updated 2 years ago
- Official Pytorch implementation of TargetNet, Bioinformatics 2022☆14Apr 9, 2022Updated 4 years ago
- Published in PLOS ONE. Phage-host interaction prediction tool that uses protein language models to represent the receptor-binding protein…☆17Jul 13, 2025Updated last year
- A simple fastp-MultiQC nextflow pipeline☆12Feb 2, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Course material for CSAMA 2015: Statistics and Computing in Genome Data Science☆11Mar 15, 2023Updated 3 years ago
- a novel encoding method for viral identification in metagenomics☆15Sep 20, 2023Updated 2 years ago
- NLP for Proteins - A paper collection☆13Sep 10, 2020Updated 5 years ago
- ☆17Mar 18, 2023Updated 3 years ago
- heterozygosity-based estimator of Rho - https://academic.oup.com/genetics/advance-article/doi/10.1093/genetics/iyac100/6623412☆12Aug 24, 2025Updated 11 months ago
- CSII AI facial recognition.☆12Dec 27, 2022Updated 3 years ago
- The Sprint AI Training for African Medical Imaging Knowledge Translation (SPARK) program is designed to train a new generation of African…☆10Mar 6, 2025Updated last year
- Weighted Masks Fusion (WMF) - Ensembling for Instance Segmentation.☆11Aug 1, 2023Updated 3 years ago
- ☆57Jul 29, 2019Updated 7 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- D Text User Interface library☆12Jun 28, 2019Updated 7 years ago
- Function prediction using a deep ontology-aware classifier☆87Nov 21, 2022Updated 3 years ago
- ☆20Apr 16, 2024Updated 2 years ago
- ☆20Jul 6, 2021Updated 5 years ago
- ☆14Apr 10, 2024Updated 2 years ago
- Turning Ontologies Plus Annotation Properties into Vectors☆37Sep 26, 2020Updated 5 years ago
- MilGNet: Deep Multiple Instance Learning on Heterogeneous Graph for Drug-disease Association Prediction☆18Nov 24, 2024Updated last year