muhaochen / seq_ppiLinks
This is the repository for PIPR. This repository contains the source code and links to some datasets used in the ISMB/ECCB-2019 paper "Multifaceted Protein-Protein Interaction Prediction Based on Siamese Residual RCNN".
☆106Updated 2 years ago
Alternatives and similar repositories for seq_ppi
Users that are interested in seq_ppi are comparing it to the libraries listed below
Sorting:
- Codes and models for the paper "Learning Unknown from Correlations: Graph Neural Network for Inter-novel-protein Interaction Prediction".☆83Updated 3 years ago
- ☆92Updated 2 years ago
- A PyTorch implementation of GCN with mutual attention for protein-protein interaction prediction☆61Updated 4 years ago
- Interpretable bilinear attention network with domain adaptation improves drug-target prediction.☆133Updated 2 years ago
- Protein-compound affinity prediction through unified RNN-CNN☆151Updated last year
- a novel DTA predition method using graph neural network☆75Updated 2 years ago
- Protein Interface Prediction using Graph Convolutional Networks☆93Updated 5 years ago
- DeepConv-DTI: Prediction of drug-target interactions via deep learning with convolution on protein sequences☆78Updated 3 years ago
- TransformerCPI: Improving compound–protein interaction prediction by sequence-based deep learning with self-attention mechanism and label…☆151Updated 3 years ago
- ☆130Updated 3 years ago
- Multi-task and masked language model-based protein sequence embedding models.☆104Updated 4 years ago
- Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure☆158Updated 4 years ago
- MONN: a Multi-Objective Neural Network for Predicting Pairwise Non-Covalent Interactions and Binding Affinities between Compounds and Pro…☆104Updated 5 years ago
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆61Updated last year
- ☆67Updated 3 years ago
- PaccMann models for protein language modeling☆43Updated 4 years ago
- ☆110Updated 3 years ago
- Predicting Drug Protein Interaction using Quasi-Visual Question Answering System☆126Updated last year
- Graph Network for protein-protein interface☆120Updated last year
- ☆54Updated last year
- ☆22Updated 2 years ago
- open source repository☆143Updated 2 years ago
- source code for https://arxiv.org/abs/2005.11248 "Accelerating Antimicrobial Discovery with Controllable Deep Generative Models and Molec…☆106Updated 2 months ago
- Protein-protein interaction sites prediction through combining local and global features with deep neural networks☆54Updated 6 years ago
- ☆46Updated last year
- MolTrans: Molecular Interaction Transformer for Drug Target Interaction Prediction (Bioinformatics)☆219Updated 3 years ago
- ☆90Updated 3 years ago
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆106Updated last week
- LM-GVP: A Generalizable Deep Learning Framework for Protein Property Prediction from Sequence and Structure☆65Updated last year
- DeepAAI☆35Updated 11 months ago