cansyl / DEEPredLinks
☆25Updated 3 years ago
Alternatives and similar repositories for DEEPred
Users that are interested in DEEPred are comparing it to the libraries listed below
Sorting:
- Function prediction using a deep ontology-aware classifier☆84Updated 2 years ago
- Modelling the Language of Life - Deep Learning Protein Sequences☆74Updated 4 years ago
- ☆48Updated 10 months ago
- Evolutionary velocity with protein language models☆94Updated last year
- Protein sequence classification with self-supervised pretraining☆82Updated 3 years ago
- Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your co…☆73Updated 2 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆65Updated 3 years ago
- Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…☆69Updated 2 years ago
- A Python package for extracting protein sequence features☆63Updated 3 years ago
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Updated 6 years ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆34Updated last month
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆104Updated 4 months ago
- Analysis and figure code from Alley et al. 2019.☆58Updated 2 years ago
- Package for processing and analyzing glycans and their role in biology.☆79Updated last week
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Updated 6 years ago
- Machine learning workflows for analyzing high-throughput protein data☆26Updated 8 years ago
- Homology reduced UniProt, train-/valid-/testsets for language modeling☆16Updated 3 years ago
- ☆132Updated 3 years ago
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆50Updated last year
- The Complete Python Antibody Library☆24Updated last month
- A Python-based Effective Feature Generation Tool from DNA, RNA, and Protein Sequences☆97Updated 3 years ago
- PSIPRED Protein Secondary Structure Predictor☆58Updated 3 months ago
- Deep networks for protein functional inference☆177Updated 4 months ago
- Draw RNA secondary structures in python.☆49Updated 3 months ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆68Updated 3 years ago
- deep protein solubility prediction☆40Updated 6 years ago
- Code for reproducing results of "Unsupervised embeddings is all you need for protein function prediction"☆41Updated 2 years ago
- ☆110Updated 3 years ago
- PyTorch implementation of bimodal neural networks for drug-cell (pharmarcogenomics) and drug-protein (proteochemometrics) interaction pre…☆54Updated 2 months ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Updated last year