psipred / FFPredGANLinks
Improving protein function prediction with synthetic feature samples created by generative adversarial networks
☆22Updated 5 years ago
Alternatives and similar repositories for FFPredGAN
Users that are interested in FFPredGAN are comparing it to the libraries listed below
Sorting:
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆30Updated 2 years ago
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆61Updated 8 months ago
- The standalone version of SPOT-1D-Single available for public use for research purposes.☆24Updated last year
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆61Updated last year
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Updated 6 years ago
- Collecting AMP MIC data from different sources, then running a GAN to output promising sequences☆85Updated last year
- Paratope Prediction using Deep Learning☆61Updated 2 years ago
- This repository contains the stand-alone tool for MusiteDeep server☆34Updated 4 years ago
- Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies☆92Updated 2 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- ☆22Updated 2 years ago
- Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure☆52Updated 8 months ago
- Fully convolutional neural networks for protein residue-residue contact prediction☆43Updated 6 years ago
- Deep learning protein-protein binding sites prediction☆22Updated 2 years ago
- ☆38Updated 2 years ago
- Code for our paper "Protein sequence design with a learned potential"☆81Updated 2 years ago
- Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicate…☆45Updated last year
- Protein sequence classification with self-supervised pretraining☆82Updated 3 years ago
- deep protein solubility prediction☆40Updated 6 years ago
- Long short-term memory recurrent neural networks for learning peptide and protein sequences to later design new, similar examples.☆77Updated 2 years ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 5 years ago
- Geometry-aware protein binding site predictor☆25Updated last year
- ☆25Updated last year
- ☆29Updated 5 years ago
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆70Updated last year
- ☆59Updated 3 years ago
- Pytorch implementation of DeepNovoV2, a state-of-the-art de novo peptide sequencing model.☆25Updated 6 years ago
- PaccMann models for protein language modeling☆43Updated 4 years ago
- Graph-based representation learning method for protein function prediction☆24Updated 2 months ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆37Updated 2 months ago