Alternatives and similar repositories for Graph2GO

Users that are interested in Graph2GO are comparing it to the libraries listed below

• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆33Updated 11 months ago
• alexarnimueller / modlAMP
  Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.
  ☆60Updated 2 months ago
• xinyu-dev / annotate_v
  Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python
  ☆30Updated last year
• Rostlab / EAT
  Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…
  ☆36Updated 4 months ago
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆24Updated last year
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆47Updated 7 months ago
• bioinf-mcb / Metagenomic-DeepFRI
  Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
  ☆38Updated 5 months ago
• Rostlab / bindPredict
  Prediction of binding residues for metal ions, nucleic acids, and small molecules.
  ☆32Updated 5 months ago
• Rostlab / goPredSim
  ☆46Updated 6 months ago
• yourh / DeepGraphGO
  DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction
  ☆35Updated 3 years ago
• YihePang / DisoFLAG
  Accurate prediction of protein intrinsic disorder and its functions using graph-based interaction protein language model
  ☆20Updated 9 months ago
• tymor22 / tm-vec
  ☆68Updated 8 months ago
• GreiffLab / manuscript_ab_epitope_interaction
  ☆25Updated last year
• Shen-Lab / TALE
  Transformer-based protein function Annotation with joint feature-Label Embedding
  ☆35Updated 5 months ago
• lyjps / Struct2GO
  Struct2GO:protein function prediction based on Graph pooling algorithm and AlphaFold2 structure information
  ☆27Updated last year
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆53Updated 5 months ago
• biomed-AI / GraphSite
  GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures
  ☆59Updated 10 months ago
• FPPGroup / CodonBERT
  CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.
  ☆36Updated 8 months ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆38Updated last year
• tadorfer / nlprot
  NLP for Proteins - A paper collection
  ☆13Updated 4 years ago
• sinc-lab / lncRNA-folding
  ☆18Updated last year
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆88Updated last year
• Devil625 / Codon_Optimization
  https://www.nature.com/articles/s41598-020-74091-z#Tab1
  ☆40Updated last year
• Superzchen / iFeatureOmega-CLI
  iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequence…
  ☆32Updated last year
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆106Updated 9 months ago
• SNU-CSSB / RF2-Lite
  ☆30Updated last year
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆21Updated 2 weeks ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆58Updated 4 years ago
• kWeissenow / EMBER2
  Alignment-free structure prediction using protein language models
  ☆22Updated 2 years ago
• PaccMann / paccmann_proteomics
  PaccMann models for protein language modeling
  ☆42Updated 3 years ago