Alternatives and similar repositories for Graph2GO:

Users that are interested in Graph2GO are comparing it to the libraries listed below

• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆33Updated 10 months ago
• Rostlab / bindPredict
  Prediction of binding residues for metal ions, nucleic acids, and small molecules.
  ☆32Updated 4 months ago
• Doudna-lab / GARNET_DL
  ☆36Updated 3 months ago
• lyjps / Struct2GO
  Struct2GO:protein function prediction based on Graph pooling algorithm and AlphaFold2 structure information
  ☆26Updated last year
• GreiffLab / manuscript_ab_epitope_interaction
  ☆24Updated last year
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆24Updated last year
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆46Updated 6 months ago
• zongmingchua / cafa5
  Code for generating model and predictions for CAFA5 competition 2023 (4th place solution)
  ☆13Updated 11 months ago
• Rostlab / goPredSim
  ☆46Updated 4 months ago
• xinyu-dev / annotate_v
  Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python
  ☆30Updated last year
• cansyl / ECPred
  ☆16Updated 2 years ago
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆26Updated last year
• FPPGroup / CodonBERT
  CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.
  ☆35Updated 7 months ago
• rnajena / EpiDope
  Prediction of B-cell epitopes from amino acid sequences using deep neural networks.
  ☆16Updated 2 years ago
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆50Updated 4 months ago
• SNU-CSSB / RF2-Lite
  ☆26Updated 10 months ago
• duolinwang / MusiteDeep_web
  This repository contains the stand-alone tool for MusiteDeep server
  ☆33Updated 4 years ago
• BioComputingUP / MobiDB-lite
  Long disorder consensus predictor
  ☆13Updated last month
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆104Updated 7 months ago
• tymor22 / tm-vec
  ☆66Updated 7 months ago
• minmarg / gtalign_alpha
  GTalign, HPC protein structure alignment, superposition and search (alpha release)
  ☆42Updated 3 months ago
• microsoft / protnote
  ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…
  ☆35Updated last week
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆83Updated last year
• sinc-lab / lncRNA-folding
  ☆17Updated last year
• HannesStark / protein-localization
  Using Transformer protein embeddings with a linear attention mechanism to make SOTA de-novo predictions for the subcellular location of p…
  ☆63Updated last year
• JinsenLi / deepDNAshape
  A method to predict DNA shape features considering farther flanking region.
  ☆29Updated 7 months ago
• tadorfer / nlprot
  NLP for Proteins - A paper collection
  ☆13Updated 4 years ago
• yourh / DeepGraphGO
  DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction
  ☆35Updated 3 years ago
• kWeissenow / EMBER2
  Alignment-free structure prediction using protein language models
  ☆22Updated 2 years ago
• biomed-AI / GraphSite
  GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures
  ☆59Updated 8 months ago