yanzhanglab / Graph2GO
Graph-based representation learning method for protein function prediction
☆24Updated 4 years ago
Alternatives and similar repositories for Graph2GO
Users that are interested in Graph2GO are comparing it to the libraries listed below
Sorting:
- Feature map and function annotation of Proteins☆33Updated 11 months ago
- Accurate prediction of protein intrinsic disorder and its functions using graph-based interaction protein language model☆20Updated 8 months ago
- Struct2GO:protein function prediction based on Graph pooling algorithm and AlphaFold2 structure information☆27Updated last year
- ☆16Updated 3 years ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆32Updated 5 months ago
- ☆25Updated last year
- DeepECtransformer☆24Updated last year
- DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction☆35Updated 3 years ago
- Detection of remote homology by comparison of protein language model representations☆53Updated 5 months ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆105Updated 8 months ago
- ☆68Updated 7 months ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆36Updated 3 months ago
- ☆46Updated 5 months ago
- ☆36Updated 4 months ago
- A domain parser for Alphafold models☆36Updated last year
- Protein language model trained on coding DNA☆47Updated 6 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆58Updated 4 years ago
- GTalign, HPC protein structure alignment, superposition and search (alpha release)☆44Updated 4 months ago
- This repository contains the stand-alone tool for MusiteDeep server☆33Updated 4 years ago
- ☆18Updated last year
- Fast protein domain structure embedding+search tool☆20Updated last week
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆30Updated last year
- Alignment-free structure prediction using protein language models☆22Updated 2 years ago
- A method to predict DNA shape features considering farther flanking region.☆30Updated 7 months ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆35Updated 8 months ago
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆60Updated 2 months ago
- Parameter-efficient embeddings for proteins, pretrained using a contrastive loss.☆29Updated 4 years ago
- https://www.nature.com/articles/s41598-020-74091-z#Tab1☆39Updated last year
- GraphPart, a data partitioning method for ML on biological sequences☆26Updated last year
- Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.☆37Updated 5 months ago