Alternatives and similar repositories for Graph2GO

Users that are interested in Graph2GO are comparing it to the libraries listed below

• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆33Updated last year
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆28Updated last year
• Rostlab / goPredSim
  ☆48Updated 10 months ago
• BioComputingUP / MobiDB-lite
  Long disorder consensus predictor
  ☆17Updated last month
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆25Updated 2 weeks ago
• idptools / sparrow
  Next generation sequence parameter library for proteins
  ☆35Updated 3 weeks ago
• Superzchen / iFeatureOmega-CLI
  iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequence…
  ☆33Updated 2 years ago
• Rostlab / EAT
  Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…
  ☆37Updated last month
• kansil / PROBE
  Trainable representation analysis study repository
  ☆44Updated 3 years ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆59Updated 4 years ago
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆30Updated last year
• tymor22 / tm-vec
  ☆70Updated last year
• rnajena / EpiDope
  Prediction of B-cell epitopes from amino acid sequences using deep neural networks.
  ☆17Updated 3 years ago
• lyjps / Struct2GO
  Struct2GO:protein function prediction based on Graph pooling algorithm and AlphaFold2 structure information
  ☆28Updated last year
• biomed-AI / GPSite
  Geometry-aware protein binding site predictor
  ☆24Updated last year
• ShenLab / gMVP
  ☆21Updated 2 years ago
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆120Updated last year
• Rostlab / bindPredict
  Prediction of binding residues for metal ions, nucleic acids, and small molecules.
  ☆34Updated last month
• wrf / pdbcolor
  Python code to color a PDB structure based on parameters from a multiple sequence alignment
  ☆32Updated 2 years ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆31Updated 2 years ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆94Updated last year
• BioColLab / PFresGO
  ☆21Updated last year
• Shen-Lab / TALE
  Transformer-based protein function Annotation with joint feature-Label Embedding
  ☆35Updated 9 months ago
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆50Updated 11 months ago
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆48Updated 3 years ago
• xinyu-dev / annotate_v
  Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python
  ☆30Updated 2 years ago
• esbgkannan / kibby
  A fast, alignment-free method for estimating sequence conservation using protein sequence embedding
  ☆17Updated 2 years ago
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆55Updated 9 months ago
• alexarnimueller / modlAMP
  Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.
  ☆61Updated 6 months ago
• Doudna-lab / GARNET_DL
  ☆36Updated 8 months ago