yanzhanglab / Graph2GO
Graph-based representation learning method for protein function prediction
☆24Updated 4 years ago
Alternatives and similar repositories for Graph2GO:
Users that are interested in Graph2GO are comparing it to the libraries listed below
- DeepECtransformer☆23Updated last year
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆29Updated last year
- Feature map and function annotation of Proteins☆32Updated 8 months ago
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆55Updated 2 years ago
- ☆24Updated last year
- Protein language model trained on coding DNA☆46Updated 4 months ago
- Detection of remote homology by comparison of protein language model representations☆47Updated 2 months ago
- ☆65Updated 5 months ago
- GraphPart, a data partitioning method for ML on biological sequences☆24Updated last year
- ☆32Updated 5 months ago
- ☆33Updated last month
- iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequence…☆29Updated last year
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆81Updated 11 months ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆32Updated 2 months ago
- GTalign, HPC protein structure alignment, superposition and search (alpha release)☆41Updated last month
- ☆20Updated 11 months ago
- HoTS: Sequence-based prediction of binding regions and drug-target interactions.☆26Updated 2 years ago
- [Nat. Commun.] Code for paper 'Attention-based multi-label neural networks for integrated prediction and interpretation of twelve widely …☆28Updated 3 years ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆34Updated 5 months ago
- ☆44Updated 3 months ago
- A domain parser for Alphafold models☆34Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆57Updated 3 years ago
- Dual-core Multi-agent Learning Framework For EC Number Prediction☆18Updated 3 months ago
- DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction☆35Updated 3 years ago
- Struct2GO:protein function prediction based on Graph pooling algorithm and AlphaFold2 structure information☆27Updated last year
- ☆16Updated 2 years ago
- ☆29Updated last year
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆52Updated 3 months ago
- Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.☆37Updated 2 months ago
- Machine learning prediction of enzyme optimum pH☆29Updated last month