micro-manager / pymmcoreLinks
Python bindings for MMCore, Micro-Manager's device control layer
☆35Updated last week
Alternatives and similar repositories for pymmcore
Users that are interested in pymmcore are comparing it to the libraries listed below
Sorting:
- Pure python/C++ micro-manager ecosystem☆40Updated this week
- GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets☆69Updated last week
- Place to discuss the future design of a universal microscope hardware interface☆15Updated 4 years ago
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆75Updated last week
- An implementation agnostic schema for describing a sequence of events during a multi-dimensional imaging acquisition.☆19Updated last week
- ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of mu…☆77Updated last month
- Creating figures and animations for multi-channel images with a focus on microscopy.☆77Updated 7 months ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated 3 months ago
- native Python dataclasses for the OME data model☆57Updated last week
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆65Updated last week
- A napari plugin for zarr backed OME-NGFF images☆33Updated 3 weeks ago
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆79Updated last week
- Browse your OMERO database from within napari.☆38Updated last week
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated last week
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Updated 10 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 2 months ago
- 1d plotting in napari-based canvas.☆26Updated last week
- Running compute-intense parts of BigStitcher distributed☆26Updated this week
- A napari plugin for making animations☆84Updated 10 months ago
- python tools for BigDataViewer☆22Updated 6 months ago
- Particle tracking by solving linear assignment problem.☆53Updated last month
- A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation☆28Updated last month
- Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction☆65Updated this week
- ☆51Updated 2 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆17Updated 2 months ago
- A hub to start the next generation of Microscope Control Software☆55Updated 4 years ago
- Python control of micro-manager for customized data acquisition☆170Updated 3 months ago
- ☆30Updated last year
- Accelerated Pixel and Object Classifiers (APOC)☆56Updated 4 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 2 months ago