nicost / micro-managerLinks
Microscope control and image acquisition integrated with ImageJ.
☆16Updated last week
Alternatives and similar repositories for micro-manager
Users that are interested in micro-manager are comparing it to the libraries listed below
Sorting:
- The Fluorescent Protein Database☆78Updated this week
- ☆24Updated 4 months ago
- Microscope control software☆68Updated 11 months ago
- An Ilastik-like interactive pixel classifier.☆16Updated last year
- ExTrack MLE for diffusive noisy single-particle tracks☆14Updated 4 months ago
- Lectures for a napari training course☆50Updated 2 years ago
- Python nd2 reader based on the ND2 SDK☆17Updated 4 years ago
- A toolkit to quantify cell dynamics in living tissues☆12Updated 7 years ago
- Fiji's plugin for colocalization analysis☆28Updated 11 months ago
- ☆21Updated this week
- STORM movie analysis code☆122Updated last year
- Detection of Molecules plugin for ImageJ: SMLM 2D/3D localizations, drift and chromatic aberration correction, etc☆15Updated 3 years ago
- Tool for segmentation in bioimaging☆35Updated this week
- ImageJ plugin detecting and colocalizing particles of given size (vesicles, dots, etc on biological microscopy images)☆19Updated 7 months ago
- CLIJ is deprecated. Visit CLIJ2☆56Updated 4 years ago
- Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction☆76Updated this week
- Commands and Classes for interfacing between Imaris and Fiji☆13Updated last year
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆162Updated last week
- Localization analysis software for super-resolution microscopy☆22Updated 4 months ago
- TrackMate is your buddy for your everyday tracking.☆225Updated last week
- Public releases of TARDIS☆11Updated 2 years ago
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆221Updated 2 months ago
- Pure Python library for reading NIS Elements ND2 images and metadata☆48Updated last year
- Read and write life sciences file formats☆142Updated 7 months ago
- A napari plugin for clustering objects according to their properties.☆90Updated last week
- Python bindings for MMCore, Micro-Manager's device control layer☆35Updated last month
- ☆36Updated last year
- Single-cell fluorescence microscopy data analysis☆26Updated 4 years ago
- CellProfiler tutorial pipelines and images☆98Updated last week
- python library for particles tracking in 2D+t and 3D+t scientific images☆16Updated last year