nicost / micro-manager

Related projects ⓘ

Alternatives and complementary repositories for micro-manager

• bigdataprocessor / bigdataprocessor2
  ☆20Updated last month
• UU-cellbiology / ComDet
  ImageJ plugin detecting and colocalizing particles of given size (vesicles, dots, etc on biological microscopy images)
  ☆13Updated last year
• tferr / Scripts
  Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ
  ☆24Updated 2 years ago
• UU-cellbiology / DoM_Utrecht
  Detection of Molecules plugin for ImageJ, Utrecht University
  ☆14Updated 2 years ago
• sofroniewn / napari-training-course
  Lectures for a napari training course
  ☆50Updated last year
• BIOP / EasyXT-FIJI
  Commands and Classes for interfacing between Imaris and Fiji
  ☆12Updated last month
• saalfeldlab / n5-ij
  ImageJ convenience layer for N5
  ☆15Updated this week
• AndrewGYork / high_na_single_objective_lightsheet
  Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/hi…
  ☆22Updated 5 months ago
• micro-manager / futureMMCore
  Place to discuss the future design of a universal microscope hardware interface
  ☆15Updated 3 years ago
• BiAPoL / imagej-macro-cheat-sheet
  ☆19Updated 3 years ago
• hinderling / napari_pixel_classifier
  An Ilastik-like interactive pixel classifier.
  ☆16Updated 2 months ago
• vanTeeffelenLab / ExTrack
  ExTrack MLE for diffusive noisy single-particle tracks
  ☆12Updated last month
• ariel-waisman / LabelsToROIs
  A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification
  ☆21Updated 3 years ago
• rosalindfranklininstitute / RedLionfish
  ☆29Updated 8 months ago
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆39Updated 3 weeks ago
• dbsb-juntendo / descSPIM
  User-affordable and versatile light-sheet microscopy system for cleared specimens
  ☆15Updated 8 months ago
• Open-Science-Tools / nd2reader
  Pure Python library for reading NIS Elements ND2 images and metadata
  ☆45Updated 9 months ago
• cleterrier / Utils
  ☆10Updated last year
• BIOP / ijp-LaRoMe
  some useful function to get Label from ROIs and vice versa , and more!
  ☆12Updated last year
• pymmcore-plus / useq-schema
  An implementation agnostic schema for describing a sequence of events during a multi-dimensional imaging acquisition.
  ☆16Updated this week
• macronucleus / Chromagnon
  Image correction software for chromatic shifts in fluorescence microscopic images
  ☆21Updated last year
• ClearVolume / imglib2-clearvolume
  ☆11Updated 2 years ago
• pymmcore-plus / napari-micromanager
  GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets
  ☆61Updated last week
• kwolbachia / Visualization_toolset
  Imagej toolset to ease hyperstacks visualization and handling
  ☆22Updated last month
• wbif-bristol / ImageJ-Fiji-Level-2-course
  Materials for the "ImageJ/Fiji Level 2: Automation and batch processing using macros" course taught at the Wolfson Bioimaging Facility, U…
  ☆12Updated 2 years ago
• kreshuklab / go-nuclear
  Guides and code for 3D nuclear instance segmentation
  ☆19Updated this week
• quantixed / imagej-macros
  quantixed FIJI update site
  ☆16Updated 3 weeks ago
• pymmcore-plus / pymmcore-plus
  Pure python/C++ micro-manager ecosystem
  ☆32Updated this week
• bioimagebook / bioimagebook.github.io
  An introduction to bioimage analysis - http://bioimagebook.github.io
  ☆60Updated 3 months ago
• tlambert03 / ome-types
  native Python dataclasses for the OME data model
  ☆53Updated this week