bigbio / sdrf-pipelines
A repository to convert SDRF proteomics files into pipelines config files
☆16Updated last week
Alternatives and similar repositories for sdrf-pipelines:
Users that are interested in sdrf-pipelines are comparing it to the libraries listed below
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆34Updated last week
- mzTab Reporting MS-based Proteomics and Metabolomics Results☆39Updated 2 months ago
- pathway and network analysis for metabolomics☆39Updated 8 months ago
- An tandem mass spectrometry (MS/MS) sequence database search tool.☆46Updated this week
- A collection of common mz values found in mass spectrometry.☆19Updated 7 months ago
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆21Updated 3 weeks ago
- The Proteomics sample metadata: Standard for experimental design annotation in proteomics datasets☆80Updated 3 months ago
- Core Utils for Mass Spectrometry Data☆16Updated 3 months ago
- Metabolomics Tools for Galaxy☆21Updated 8 years ago
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆17Updated this week
- HUPO-PSI mass spectrometry CV☆29Updated this week
- Confidence Estimation for Mass Spectrometry Proteomics☆12Updated 7 months ago
- A Python interface to proteomics data repositories☆32Updated 9 months ago
- Community-curated tutorials and datasets for ML in proteomics☆49Updated 2 months ago
- Galaxy tools for metabolomics maintained by Workflow4Metabolomics☆26Updated last week
- A library for QC report based on MultiQC framework☆14Updated 2 months ago
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆14Updated 2 years ago
- ☆56Updated 8 months ago
- ☆14Updated 2 years ago
- asari, metabolomics data preprocessing☆44Updated last week
- TimsR: Easy access to timsTOF Pro data from R.☆9Updated 3 years ago
- RHermes is a semi-targeted metabolomics package to deeply characterize biological and environmental samples.☆25Updated last year
- Quantitative features for mass spectrometry data☆26Updated this week
- DEqMS is a tool for quantitative proteomic analysis☆22Updated last month
- Fast and flexible semi-supervised learning for peptide detection in Python☆43Updated last month
- A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant☆42Updated 3 weeks ago
- ☆25Updated last year
- RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control ana…☆64Updated last year
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆33Updated 8 months ago
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆26Updated 6 years ago