sheynkman-lab / Long-Read-Proteogenomics
A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
☆43Updated 2 years ago
Alternatives and similar repositories for Long-Read-Proteogenomics:
Users that are interested in Long-Read-Proteogenomics are comparing it to the libraries listed below
- Snakemake-based workflow for detecting structural variants in genomic data☆79Updated this week
- optimization of ribosome P-site positioning in ribosome profiling data☆46Updated last year
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆59Updated 2 weeks ago
- A small-RNA sequencing analysis pipeline☆79Updated 2 weeks ago
- ☆54Updated 3 years ago
- Tip and tricks for BAM files☆84Updated 6 years ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆66Updated this week
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆73Updated 3 years ago
- A list of alternative splicing analysis resources☆41Updated 3 months ago
- Quantification of transposable element expression using RNA-seq☆64Updated last year
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆82Updated last week
- Unsorted scripts for bioinformatics☆60Updated 3 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆76Updated 2 months ago
- Publication quality NGS track plotting☆111Updated 2 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆80Updated 3 weeks ago
- ☆48Updated 3 years ago
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆48Updated last year
- Check strandedness of RNA-Seq fastq files☆119Updated 2 years ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆72Updated this week
- Precision HLA typing from next-generation sequencing data☆64Updated last week
- HMMRATAC peak caller for ATAC-seq data☆100Updated 3 months ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆68Updated last month
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆73Updated last year
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆108Updated 2 weeks ago
- Relevant papers for CNV and SV approaches☆94Updated 3 months ago
- A continually expanding collection of RNA-seq tools☆47Updated 4 months ago
- Estimate locus specific human LINE-1 expression.☆32Updated 2 years ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆54Updated 2 years ago
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆41Updated last year
- Allele-specific alignment sorting☆54Updated 2 years ago