A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
☆51May 26, 2026Updated 3 weeks ago
Alternatives and similar repositories for Long-Read-Proteogenomics
Users that are interested in Long-Read-Proteogenomics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Demultiplexing and debarcoding tool designed for LR-Split-seq data.☆25Oct 19, 2023Updated 2 years ago
- ☆39Apr 25, 2023Updated 3 years ago
- Gencode UTR fix☆17Jan 11, 2023Updated 3 years ago
- Repository for the Anczukow-Lab splicing pipeline☆17Mar 17, 2025Updated last year
- Nanopanel2: a somatic variant caller for Nanopore panel sequencing data☆11Sep 21, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆19Jul 3, 2022Updated 3 years ago
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago
- Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data☆11Dec 11, 2025Updated 6 months ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆269May 21, 2026Updated 3 weeks ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16May 17, 2022Updated 4 years ago
- A Python library to visualize and analyze long-read transcriptomes☆69Jan 19, 2026Updated 4 months ago
- ☆27May 8, 2022Updated 4 years ago
- Joint calling of gVCF, following GATK4 Best Practices☆12Apr 3, 2019Updated 7 years ago
- Nextflow implementation of the smoove workflow and other tools for SV calling and QC☆12Nov 12, 2020Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Apr 10, 2023Updated 3 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆132Apr 10, 2026Updated 2 months ago
- Technology agnostic long read analysis pipeline for transcriptomes☆159Jan 25, 2024Updated 2 years ago
- ☆36Apr 11, 2025Updated last year
- Iso-Seq reads simulator for PacBio and ONT full-length isoform sequencing technologies☆17Mar 1, 2022Updated 4 years ago
- Community effort to evaluate computational methods for the detection and quantification of poly(A) sites and estimating their differentia…☆15Jan 11, 2024Updated 2 years ago
- mist R package files☆10May 5, 2025Updated last year
- Comprehensive and scalable differential splicing analyses☆18Dec 19, 2025Updated 5 months ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆20Apr 24, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ENCODE long read RNA-seq pipeline☆52Apr 13, 2026Updated 2 months ago
- Structural variant pipeline☆18Jun 25, 2020Updated 5 years ago
- ☆10Sep 20, 2022Updated 3 years ago
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Jun 4, 2023Updated 3 years ago
- ☆14Dec 22, 2025Updated 5 months ago
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆38Nov 8, 2023Updated 2 years ago
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆229Updated this week
- Long read to rMATS☆32May 5, 2023Updated 3 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆57Jun 29, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆73Jan 31, 2024Updated 2 years ago
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆44Mar 21, 2026Updated 2 months ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆57Oct 8, 2021Updated 4 years ago
- Annotation and segmentation of MAS-seq data☆20May 25, 2023Updated 3 years ago
- R package to detect splicing QTLs (sQTLs)☆13Jul 3, 2023Updated 2 years ago
- ☆16May 27, 2026Updated 2 weeks ago
- A versatile method for systematic identification of differential RNA splicing across platforms☆16Jun 10, 2026Updated last week