InMoose is the INtegrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.
☆130Mar 2, 2026Updated 2 weeks ago
Alternatives and similar repositories for inmoose
Users that are interested in inmoose are comparing it to the libraries listed below
Sorting:
- pyComBat is a Python 3 implementation of ComBat, one of the most widely used tool for correcting technical biases, called batch effects, …☆90Feb 24, 2024Updated 2 years ago
- qpx (Quantitative Proteomics eXchange) format (aka quantms.io) a format to capture a full proteomics experiment☆16Updated this week
- A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.☆740Updated this week
- Evaluating batch correction methods for image-based cell profiling☆15Aug 11, 2025Updated 7 months ago
- reComBat package to correct batch effects☆13Jul 17, 2023Updated 2 years ago
- Absolute quantification package based on quantms.io☆16Sep 25, 2025Updated 5 months ago
- Multi-omics factor analysis v2☆59Jan 26, 2026Updated last month
- Python pipeline for metabolomics data preprocessing, QC, standardization and annotation☆16Dec 5, 2025Updated 3 months ago
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆13Mar 23, 2024Updated last year
- xOmicsShiny: an R Shiny application for cross-omics data analysis and pathway mapping, Bioinformatics Advances, Volume 5, Issue 1, 2025, …☆38Feb 6, 2026Updated last month
- Differential expression analysis for single-cell RNA-seq data.☆206Oct 21, 2025Updated 5 months ago
- Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)☆24Jul 6, 2023Updated 2 years ago
- The C. elegans transcriptome at single cell resolution☆11Mar 28, 2018Updated 7 years ago
- PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)☆292Feb 17, 2025Updated last year
- Negative binomial maximum likelihood estimate implementation in Python using L-BFGS-B☆15Jan 27, 2022Updated 4 years ago
- Code repository for the paper "Towards a Comprehensive Evaluation of Dimension Reduction Methods for Data Visualization"☆14Jul 4, 2024Updated last year
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆13Jan 27, 2023Updated 3 years ago
- DLBCL-Morph dataset containing high resolution tissue microarray scans from 209 DLBCL cases, with geometric features computed using deep …☆40Dec 22, 2020Updated 5 years ago
- Work with trained factor models in Python☆39Oct 22, 2024Updated last year
- Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.☆73Jun 6, 2025Updated 9 months ago
- A federated implementation of PyDESeq2, based on Substra.☆15Updated this week
- ☆12Apr 2, 2021Updated 4 years ago
- A tool for large scale omics datasets evaluation☆23Jun 14, 2023Updated 2 years ago
- eVITTA: an easy Visualization and Inference Toolbox for Transcriptome Analysis☆12Mar 23, 2024Updated last year
- ☆13May 10, 2021Updated 4 years ago
- C++ lossless and lossy mass spectrometry compression☆13Sep 16, 2021Updated 4 years ago
- R and MATLAB scripts for MAGICAL☆11Jun 26, 2024Updated last year
- Nextflow implementation of scAutoQC pipeline☆11Feb 21, 2026Updated 3 weeks ago
- Gene Set Enrichment Analysis in Python☆694Mar 10, 2026Updated last week
- FusionAnnotator source code☆16Feb 27, 2026Updated 3 weeks ago
- Python implementations for Sparse CCA☆19Feb 24, 2023Updated 3 years ago
- Bayesian model for RNA velocity estimation of periodic manifolds☆35Jun 25, 2024Updated last year
- MSConnect is a Web-based integrated plateform to combine data storage/backup, process and visualization of MS-based Proteomics data.☆18Aug 19, 2025Updated 7 months ago
- Simple Python interface to CoverM's fast coverage estimation functions☆10Dec 20, 2024Updated last year
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆30Feb 2, 2026Updated last month
- Legend made easy for matplotlib☆34Jun 7, 2025Updated 9 months ago
- Multi-Omics Peptide Generator☆30Nov 6, 2025Updated 4 months ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 8 months ago
- ☆11Oct 8, 2021Updated 4 years ago