reactome / ReactomeGSALinks
R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis
☆27Updated 9 months ago
Alternatives and similar repositories for ReactomeGSA
Users that are interested in ReactomeGSA are comparing it to the libraries listed below
Sorting:
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆62Updated 2 months ago
- An S3 data object and framework for common quantitative proteomic analyses☆47Updated 3 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- CAusal Reasoning for Network Identification with integer VALue programming in R☆59Updated last year
- R package for analysing proteomics data☆49Updated 2 years ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆92Updated 8 months ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆25Updated last year
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- Explore and download data from the recount3 project☆36Updated 4 months ago
- Using BCR and expression for sequence embedding☆25Updated 3 weeks ago
- An R interface to enrichR☆92Updated 7 months ago
- Normalize CITEseq Data☆66Updated 5 months ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Bostongene cell deconvolution algorithm from RNAseq☆57Updated last year
- Using TCR and expression for sequence embedding☆58Updated 3 weeks ago
- Easy and comprehensive biological network reconstruction and analysis☆32Updated this week
- ☆62Updated 5 years ago
- Signac☆25Updated 2 years ago
- R package for the analysis of single-cell immune repertoires☆43Updated 7 months ago
- Annotated multivariate observation data in R☆50Updated 3 months ago
- R package for Pathway RespOnsive GENe activity inference☆108Updated 2 years ago
- ☆44Updated 10 months ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 6 years ago
- Standalone shiny server container for viewing CellChat object☆12Updated 4 years ago
- UniverSC: a flexible cross-platform single-cell data processing pipeline☆46Updated last year
- ☆57Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆87Updated 3 months ago
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Updated 5 years ago
- An R/Bioconductor package to identify higher-order molecular phenotypes☆18Updated last year