reactome / ReactomeGSALinks
R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis
☆25Updated 6 months ago
Alternatives and similar repositories for ReactomeGSA
Users that are interested in ReactomeGSA are comparing it to the libraries listed below
Sorting:
- Explore and download data from the recount3 project☆35Updated 3 weeks ago
- Unified access to several second-generation deconvolution methods☆71Updated last month
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated 2 years ago
- Normalize CITEseq Data☆65Updated last month
- ConsensusTME Gene Sets and R Script☆39Updated 11 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated last month
- An r package that works as a wrapper to homologene☆46Updated last year
- ☆43Updated 7 months ago
- Cancer Dependency Map package☆30Updated 9 months ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- Using BCR and expression for sequence embedding☆22Updated last week
- ☆41Updated 4 years ago
- ☆55Updated last year
- This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Can Liu, And…☆15Updated 4 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆38Updated 3 years ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆61Updated 2 months ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- Bostongene cell deconvolution algorithm from RNAseq☆53Updated last year
- ☆23Updated 2 weeks ago
- Signac☆25Updated 2 years ago
- An S3 data object and framework for common quantitative proteomic analyses☆41Updated last week
- Using self-organizing maps for visualization and interpretation of cytometry data☆28Updated 2 months ago
- Cell type pipes for R☆51Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆79Updated last week
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆61Updated 3 years ago
- CAusal Reasoning for Network Identification with integer VALue programming in R☆59Updated last year
- R package for the analysis of single-cell immune repertoires☆42Updated 3 months ago
- A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data☆16Updated 5 years ago
- R package for analysing proteomics data☆49Updated 2 years ago