benn888 / PRONAMELinks
PRONAME is an open-source bioinformatics pipeline that allows processing and significantly increasing the accuracy of Nanopore metabarcoding sequencing data.
☆16Updated last month
Alternatives and similar repositories for PRONAME
Users that are interested in PRONAME are comparing it to the libraries listed below
Sorting:
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆89Updated last year
- Making whole bacterial genome sequencing data analysis easy☆113Updated 9 months ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 6 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆57Updated 3 years ago
- Sorts amplicons from Nanopore sequencing data based on similarity☆41Updated 3 months ago
- ☆77Updated last week
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆95Updated last year
- Toolbox for comparative genomics of MAGs☆89Updated 3 months ago
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆89Updated 2 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆68Updated 4 years ago
- Kraken output generates a report for each datasets, this script takes these individual output and combines it to one file, where each col…☆24Updated last year
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆61Updated last year
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆81Updated 2 years ago
- ☆155Updated last year
- Using ggtree to build phylogenetic trees☆50Updated last year
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆49Updated 2 years ago
- IS mapping software☆57Updated 4 years ago
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 6 months ago
- Horizontal gene transfer (HGT) identification pipeline☆67Updated 2 years ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆146Updated 3 weeks ago
- Snakemake workflow for metagenomic classification with Kraken2☆67Updated 2 years ago
- Reorients assembled microbial sequences☆131Updated 5 months ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆17Updated 5 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆54Updated 3 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- A toolbox for comparative genomics.☆108Updated 4 years ago
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆49Updated 3 years ago
- Metagenomics-related extended functionalities to samtools☆22Updated 2 years ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆62Updated 4 years ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆148Updated 4 months ago