MathiasEskildsen / ONT-AmpSeqLinks
Snakemake workflow to generate OTU tables from barcoded ONT data
☆15Updated 8 months ago
Alternatives and similar repositories for ONT-AmpSeq
Users that are interested in ONT-AmpSeq are comparing it to the libraries listed below
Sorting:
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆71Updated last year
- Automated pipeline for analyses of fungal ITS from the Illumina☆31Updated 5 months ago
- PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes☆31Updated last month
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆16Updated 2 months ago
- Massively parallel phylogenetic placement of genetic sequences☆84Updated 3 years ago
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆19Updated last week
- Sequence Taxonomic Assignment by Massive Pairwise Alignments☆14Updated 2 years ago
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆104Updated 8 months ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆91Updated 2 months ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 2 months ago
- functions for analyzing phyloseq data☆28Updated 8 months ago
- Making whole bacterial genome sequencing data analysis easy☆112Updated 5 months ago
- ☆78Updated last year
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆55Updated 3 years ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- Rapid determination of appropriate reference genomes.☆97Updated 8 months ago
- GPU-accelerated DNA barcode classification☆11Updated 9 months ago
- Barcode demultiplex for Illumina I1, R1, R2 fastq.gz files☆32Updated 8 years ago
- GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click…☆83Updated 9 months ago
- Speedy versions of phyloseq functions☆48Updated last year
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆100Updated last month
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆82Updated 3 months ago
- BEAV: Bacterial Element Annotation reVamped☆69Updated last month
- ☆83Updated 2 years ago
- fastq to polished sequenses: pipeline suitable for mixed samples and long (Nanopore) reads☆48Updated 2 weeks ago
- A toolkit for analyzing and visualizing phylogenetic placement data☆62Updated 7 months ago
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆32Updated 4 months ago
- Tools for visualising microbial community amplicon data☆69Updated last month
- Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics☆22Updated 2 years ago