☆15Apr 1, 2024Updated last year
Alternatives and similar repositories for MARES_database_pipeline
Users that are interested in MARES_database_pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An open-source data management system for tracking environmental DNA samples and metadata☆15Aug 8, 2024Updated last year
- Written by Emily Curd (eecurd@g.ucla.edu), Jesse Gomer (jessegomer@gmail.com), Gaurav Kandlikar (gkandlikar@ucla.edu), Zack Gold (zjgold@…☆45Jan 18, 2024Updated 2 years ago
- ☆23Feb 23, 2023Updated 3 years ago
- the Metagenomic test for Presence Or Absence of Pathways☆13Mar 4, 2019Updated 7 years ago
- eDNA metabarcoding pipeline☆44Mar 11, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Site frequency spectrum estimation based on window expectation-maximisation algorithm☆16May 19, 2023Updated 2 years ago
- A web app for environmental DNA metabarcoding analysis☆11Dec 30, 2021Updated 4 years ago
- Shark genomics & beyond - This is a central portal page for the project Squalomix, directed mainly by Molecular Life History Laboratory a…☆11Aug 15, 2025Updated 7 months ago
- Physalia course Machine Learning for Multi-Omics Integration☆20Jun 11, 2025Updated 9 months ago
- Our laboratory repository☆11Jan 12, 2021Updated 5 years ago
- ☆18Nov 7, 2025Updated 4 months ago
- A pipeline for de novo assembly of population-level sequence capture datasets.☆12Nov 6, 2018Updated 7 years ago
- Create and maintain phylogenetic "reference packages" of biological sequences.☆22Mar 10, 2026Updated 2 weeks ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆57Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Pipeline to apply encoded Kmer analysis to protein sequences☆16Updated this week
- MetaWorks is a flexible multi-marker metabarcode pipeline for processing paired-end Illumina reads from raw fastq.gz files to taxonomic a…☆22Feb 23, 2026Updated last month
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆21Nov 14, 2025Updated 4 months ago
- A statistical framework for reference-free inference of archaic local ancestry☆16Nov 8, 2019Updated 6 years ago
- GenBank taxonomy processing tools☆15Jun 30, 2018Updated 7 years ago
- Scripts for analyzing Illumina-generated environmental DNA sequence data.☆20Feb 22, 2018Updated 8 years ago
- 2020-tutorial created by GitHub Classroom☆11Oct 28, 2020Updated 5 years ago
- Python-based pipeline for analyzing Nanopore sequencing metabarcoding data☆18Jun 28, 2021Updated 4 years ago
- Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool☆20Apr 17, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Suite of tools for pangenomics built using vg☆25Mar 6, 2026Updated 3 weeks ago
- Interface to the Bold Systems barcode webservice☆21Jan 6, 2025Updated last year
- ☆17Oct 21, 2024Updated last year
- PRONAME is an open-source bioinformatics pipeline that allows processing and significantly increasing the accuracy of Nanopore metabarcod…☆16Dec 30, 2025Updated 2 months ago
- Minimalist Python code -- based on OpenWorm and the published literature -- for modeling C. elegans neural network dynamics☆19Jul 14, 2016Updated 9 years ago
- This is the command line version of MiFish pipeline. It can also be used with any other eDNA meta-barcoding primers☆22Jul 23, 2025Updated 8 months ago
- PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes☆33Mar 21, 2026Updated last week
- Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…☆11May 8, 2024Updated last year
- Python library for identification and masking of low-complexity regions in nucleotide sequences☆10Updated this week
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Engaging visualisations, made easy.☆14Aug 7, 2024Updated last year
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Oct 30, 2023Updated 2 years ago
- Auto-analysis for Real-Time PCR (qPCR) data☆42Sep 7, 2023Updated 2 years ago
- Computational pipeline for calling consensi on R2C2 nanopore data☆31Feb 25, 2022Updated 4 years ago
- creating reference databases for amplicon sequencing☆49Jan 13, 2026Updated 2 months ago
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆17Feb 26, 2026Updated last month
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated 3 weeks ago