☆15Apr 1, 2024Updated 2 years ago
Alternatives and similar repositories for MARES_database_pipeline
Users that are interested in MARES_database_pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An open-source data management system for tracking environmental DNA samples and metadata☆15Aug 8, 2024Updated last year
- ☆24Feb 23, 2023Updated 3 years ago
- eDNA metabarcoding pipeline☆48Jul 22, 2026Updated last week
- the Metagenomic test for Presence Or Absence of Pathways☆13Mar 4, 2019Updated 7 years ago
- A web app for environmental DNA metabarcoding analysis☆11Dec 30, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Shark genomics & beyond - This is a central portal page for the project Squalomix, directed mainly by Molecular Life History Laboratory a…☆11May 27, 2026Updated 2 months ago
- Create and maintain phylogenetic "reference packages" of biological sequences.☆22May 27, 2026Updated 2 months ago
- Our laboratory repository☆11Jan 12, 2021Updated 5 years ago
- A pipeline for de novo assembly of population-level sequence capture datasets.☆12Nov 6, 2018Updated 7 years ago
- ☆19Nov 7, 2025Updated 8 months ago
- Pipeline to apply encoded Kmer analysis to protein sequences☆16Jun 22, 2026Updated last month
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆59Jul 17, 2026Updated last week
- Site frequency spectrum estimation based on window expectation-maximisation algorithm☆17May 19, 2023Updated 3 years ago
- MetaWorks is a flexible multi-marker metabarcode pipeline for processing paired-end Illumina reads from raw fastq.gz files to taxonomic a…☆23Feb 23, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool☆20Apr 17, 2019Updated 7 years ago
- Interface to the Bold Systems barcode webservice☆21Jan 6, 2025Updated last year
- A statistical framework for reference-free inference of archaic local ancestry☆15Nov 8, 2019Updated 6 years ago
- GenBank taxonomy processing tools☆15Jun 30, 2018Updated 8 years ago
- Scripts for analyzing Illumina-generated environmental DNA sequence data.☆21Feb 22, 2018Updated 8 years ago
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆21Jul 12, 2026Updated 2 weeks ago
- Python-based pipeline for analyzing Nanopore sequencing metabarcoding data☆18Jun 28, 2021Updated 5 years ago
- 2020-tutorial created by GitHub Classroom☆11Oct 28, 2020Updated 5 years ago
- Physalia course Machine Learning for Multi-Omics Integration☆21Jun 11, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Suite of tools for pangenomics built using vg☆25Mar 6, 2026Updated 4 months ago
- ☆19Oct 21, 2024Updated last year
- Written by Emily Curd (eecurd@g.ucla.edu), Jesse Gomer (jessegomer@gmail.com), Gaurav Kandlikar (gkandlikar@ucla.edu), Zack Gold (zjgold@…☆48Jan 18, 2024Updated 2 years ago
- PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes☆32Mar 21, 2026Updated 4 months ago
- This is the command line version of MiFish pipeline. It can also be used with any other eDNA meta-barcoding primers☆22Jul 23, 2025Updated last year
- Minimalist Python code -- based on OpenWorm and the published literature -- for modeling C. elegans neural network dynamics☆19Jul 14, 2016Updated 10 years ago
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 4 months ago
- Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…☆12May 8, 2024Updated 2 years ago
- Auto-analysis for Real-Time PCR (qPCR) data☆43Sep 7, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Computational pipeline for calling consensi on R2C2 nanopore data☆33Feb 25, 2022Updated 4 years ago
- Python library for identification and masking of low-complexity regions in nucleotide sequences☆13Jul 21, 2026Updated last week
- Engaging visualisations, made easy.☆14Aug 7, 2024Updated last year
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Oct 30, 2023Updated 2 years ago
- PRONAME is an open-source bioinformatics pipeline that allows processing and significantly increasing the accuracy of Nanopore metabarcod…☆18Jun 4, 2026Updated last month
- Blazing fast toolkit to work with .hic and .cool files☆45Updated this week
- Enjoy Soundcloud without the need for a Pro account.☆18Jan 16, 2019Updated 7 years ago