Snakemake pipeline for 16S, 18S and ITS metagenomics using qiime2
☆17Jan 20, 2024Updated 2 years ago
Alternatives and similar repositories for snakemake-workflow-qiime2
Users that are interested in snakemake-workflow-qiime2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PRONAME is an open-source bioinformatics pipeline that allows processing and significantly increasing the accuracy of Nanopore metabarcod…☆18Jun 4, 2026Updated 2 months ago
- Data Processing and Visualization for Metagenomics☆16Oct 31, 2024Updated last year
- 🍄 Qiime2 ITS classifiers for the UNITE database☆53May 18, 2026Updated 3 months ago
- Instructions and helpful R code for Running GEMMA and GAPIT☆13Sep 14, 2017Updated 8 years ago
- ☆11May 14, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆18Nov 19, 2022Updated 3 years ago
- An introductory workshop to GWAS analysis using PLINK and R☆15Sep 15, 2015Updated 10 years ago
- ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.☆19Aug 16, 2021Updated 5 years ago
- A Snakefile to parallelize bwa.☆13Oct 25, 2013Updated 12 years ago
- ☆18Dec 2, 2022Updated 3 years ago
- Hybrid method based on a variable-order de bruijn Graph for the error Correction of Long Reads☆11Jan 20, 2021Updated 5 years ago
- An R package for the processing of plate reader and flow cytometry data. This includes: normalisation and calibration of plate reader dat…☆10Updated this week
- ☆10Mar 11, 2025Updated last year
- Analysis of (gut) microbiome in Qiime2 and R.☆25Aug 23, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A deep learning approach that leverages language processing neural network model to accurately identify known BGCs and extrapolate novel …☆28Jan 9, 2026Updated 7 months ago
- bioinfo workflow based on snakemake☆15Feb 22, 2024Updated 2 years ago
- ☆23Aug 1, 2024Updated 2 years ago
- Code to go along with a manuscript: Bunis, et. al., Cell Reports, 2021.☆12May 3, 2023Updated 3 years ago
- Antimicrobial Resistance Analysis☆10Jun 11, 2024Updated 2 years ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Nov 21, 2018Updated 7 years ago
- Tools for analyzing trees☆13Apr 16, 2025Updated last year
- QuickEd is a high-performance exact sequence alignment based on the bound-and-align paradigm.☆31May 5, 2025Updated last year
- A library to create lore plots (logistic regression of the prevalence of a categorical variable in function of a continuous feature)☆18Aug 1, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Python3 wrapper for parallelized gene prediction using Prodigal☆11Mar 3, 2023Updated 3 years ago
- Principal component analysis plugin for D3.js☆10Aug 20, 2017Updated 8 years ago
- Amplicon sequencing analysis workflow using DADA2 and QIIME2☆256Updated this week
- Pretty, simple, optionally interactive plots for bioinformatics analysis pipelines☆14Mar 1, 2023Updated 3 years ago
- 16S pipeline using qiime2 created with snakemake☆12Aug 6, 2026Updated last week
- Data, results, and code accompanying the manuscript: "Supervised learning is an accurate method for network-based gene classification"☆10Nov 3, 2021Updated 4 years ago
- ☆10Feb 14, 2022Updated 4 years ago
- Python package for common tasks in bioinformatic.☆12Sep 24, 2025Updated 10 months ago
- Reference-free quality assessment for Hi-C sequencing data☆13Apr 30, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆13Dec 19, 2022Updated 3 years ago
- CWGCNA is an R package to perform causal inference from the WGCNA framework.☆20Oct 26, 2024Updated last year
- ☆15Mar 14, 2023Updated 3 years ago
- For computational analysis of bacterial RNA-seq data☆12Jul 14, 2017Updated 9 years ago
- The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in part…☆12May 16, 2023Updated 3 years ago
- ☆41Dec 16, 2023Updated 2 years ago
- BaseNet: A Transformer-Based Toolkit for Nanopore Sequencing Signal Decoding☆14Aug 27, 2025Updated 11 months ago