Alternatives and similar repositories for MASTER_CLASS

Users that are interested in MASTER_CLASS are comparing it to the libraries listed below

• nf-core / differentialabundance
  Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
  ☆82Updated this week
• kvittingseerup / IsoformSwitchAnalyzeR
  An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
  ☆117Updated 8 months ago
• signalbash / how_are_we_stranded_here
  Check strandedness of RNA-Seq fastq files
  ☆125Updated 3 years ago
• gagneurlab / drop
  Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders
  ☆155Updated 3 weeks ago
• nloyfer / wgbs_tools
  tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
  ☆168Updated 4 months ago
• nf-core / smrnaseq
  A small-RNA sequencing analysis pipeline
  ☆94Updated 4 months ago
• CebolaLab / RNA-seq
  Step-by-step analysis pipeline for RNA-seq data
  ☆142Updated 2 years ago
• GoekeLab / bambu
  Reference-guided transcript discovery and quantification for long read RNA-Seq data
  ☆219Updated last month
• zhxiaokang / RASflow
  RNA-Seq analysis workflow
  ☆105Updated 4 years ago
• htseq / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆106Updated 4 months ago
• GoekeLab / sg-nex-data
  Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
  ☆138Updated last month
• nf-core / cutandrun
  Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …
  ☆100Updated 3 weeks ago
• mhammell-laboratory / TElocal
  A package for quantifying transposable elements at a locus level for RNAseq datasets.
  ☆29Updated 8 months ago
• rajewsky-lab / mirdeep2
  Discovering known and novel miRNAs from small RNA sequencing data
  ☆154Updated last year
• rpetit3 / fastq-dl
  Download FASTQ files from SRA or ENA repositories.
  ☆344Updated 3 months ago
• nextflow-io / training
  Nextflow training material
  ☆196Updated last week
• boulderrinnlab / CLASS_2023
  ☆20Updated 2 years ago
• ConesaLab / SQANTI3
  Tool for the Quality Control of Long-Read Defined Transcriptomes
  ☆239Updated last week
• hbctraining / Intro-to-bulk-RNAseq
  Introduction to bulk RNA-seq
  ☆122Updated 5 months ago
• CRG-CNAG / CalliNGS-NF
  GATK RNA-Seq Variant Calling in Nextflow
  ☆136Updated 2 years ago
• davetang / learning_vcf_file
  Learning the Variant Call Format
  ☆144Updated 2 months ago
• nf-core / fetchngs
  Pipeline to fetch metadata and raw FastQ files from public databases
  ☆181Updated 2 months ago
• ENCODE-DCC / rna-seq-pipeline
  ☆155Updated 2 years ago
• epi2me-labs / wf-transcriptomes
  ☆104Updated 2 months ago
• epi2me-labs / wf-single-cell
  ☆96Updated last week
• s-andrews / nextflow_pipelines
  The set of NGS processing pipelines used at Babraham
  ☆17Updated last week
• reskejak / ATAC-seq
  Basic workflow for ATAC-seq analysis
  ☆86Updated last year
• PoisonAlien / trackplot
  Generate IGV style locus tracks from bigWig files in R
  ☆172Updated 11 months ago
• evanpeikon / co_expression_network
  A DIY guide to gene co-expression network analysis
  ☆12Updated 6 months ago
• FredHutch / SEACR
  SEACR: Sparse Enrichment Analysis for CUT&RUN
  ☆114Updated 2 years ago