boulderrinnlab / MASTER_CLASSLinks
☆10Updated 6 months ago
Alternatives and similar repositories for MASTER_CLASS
Users that are interested in MASTER_CLASS are comparing it to the libraries listed below
Sorting:
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆85Updated last week
- Check strandedness of RNA-Seq fastq files☆128Updated 3 years ago
- A small-RNA sequencing analysis pipeline☆98Updated this week
- Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders☆157Updated 3 weeks ago
- RNA-Seq analysis workflow☆105Updated 4 years ago
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆223Updated last week
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆175Updated this week
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆145Updated 3 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆120Updated last week
- Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream …☆105Updated last week
- Learning the Variant Call Format☆147Updated 4 months ago
- From RNA-seq raw reads to enriched pathways by DEGs☆33Updated last year
- Discovering known and novel miRNAs from small RNA sequencing data☆156Updated last year
- Step-by-step analysis pipeline for RNA-seq data☆156Updated 2 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆31Updated last month
- release version☆55Updated 3 years ago
- Generate IGV style locus tracks from bigWig files in R☆174Updated last year
- Web application to explore the Sequence Read Archive.☆218Updated 4 months ago
- Tool for plotting sequencing data along genomic coordinates.☆322Updated 5 months ago
- Introduction to bulk RNA-seq☆126Updated 7 months ago
- website for the rnaseq course☆114Updated last week
- GATK RNA-Seq Variant Calling in Nextflow☆137Updated 2 years ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆107Updated 6 months ago
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆271Updated last month
- A DIY guide to gene co-expression network analysis☆12Updated 8 months ago
- ☆108Updated 2 weeks ago
- A short tutorial on how to use RSEM☆139Updated 5 years ago
- Download FASTQ files from SRA or ENA repositories.☆350Updated this week
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆118Updated 2 years ago