MaestSi / ONTrackLinks
A MinION-based pipeline for tracking species biodiversity
☆13Updated last year
Alternatives and similar repositories for ONTrack
Users that are interested in ONTrack are comparing it to the libraries listed below
Sorting:
- Sorts amplicons from Nanopore sequencing data based on similarity☆40Updated 2 months ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆54Updated last year
- Mobile Genetic Elements Retrieving Tool☆16Updated 6 months ago
- Long read metagenomics practical at EBAME18☆18Updated 7 years ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆41Updated 4 years ago
- SeqSero2☆39Updated 2 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Updated 4 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54Updated 2 years ago
- A tool for Racon polishing of miniasm assemblies☆78Updated 3 months ago
- ☆37Updated 3 years ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆32Updated 7 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 9 months ago
- Split Kmer Analysis☆66Updated 3 years ago
- a collection of scripts for organising bacterial genomes by species☆81Updated 3 years ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated 3 months ago
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆60Updated 6 years ago
- Reference-free clustering and consensus forming of long-read amplicon sequencing☆60Updated 7 months ago
- Fast genealogical relationship evaluation of bacterial isolates with WGS data.☆12Updated 3 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆90Updated 2 weeks ago
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆34Updated 2 weeks ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- ☆84Updated 2 years ago
- tools for assessing the accuracy of genome assemblies☆35Updated last year
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 5 years ago
- Calculate Average Nucleotide Identity (ANI) for prokaryotic genomes☆18Updated 3 years ago
- all methods related to Enterobase☆43Updated last year
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆51Updated 2 weeks ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆49Updated 2 years ago
- Estimate metagenomic coverage and sequence diversity☆57Updated last week