MaestSi / ONTrack
A MinION-based pipeline for tracking species biodiversity
☆13Updated last year
Alternatives and similar repositories for ONTrack:
Users that are interested in ONTrack are comparing it to the libraries listed below
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆27Updated last week
- Sorts amplicons from Nanopore sequencing data based on similarity☆37Updated last month
- reference-based long read assemblies of bacterial genomes☆48Updated 3 years ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Mobile Genetic Elements Retrieving Tool☆15Updated 3 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆40Updated 5 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆60Updated 2 months ago
- SeqSero2☆35Updated last year
- ☆52Updated 3 years ago
- ☆36Updated 3 years ago
- Long read metagenomics practical at EBAME18☆18Updated 6 years ago
- whole genome MLST analysis☆42Updated last month
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated last year
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- Predict MLST directly from uncorrected long reads☆27Updated 3 years ago
- Split Kmer Analysis☆63Updated 2 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆26Updated 2 weeks ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 5 years ago
- A tool for Racon polishing of miniasm assemblies☆74Updated 4 years ago
- Perform taxonomic profiling analyses for long-read shotgun metagenomic datasets. Developed for the Long Read Sequencing Workshop 2022 at …☆13Updated 2 years ago
- ☆82Updated last year
- Kraken output generates a report for each datasets, this script takes these individual output and combines it to one file, where each col…☆23Updated 9 months ago
- Fast genealogical relationship evaluation of bacterial isolates with WGS data.☆12Updated 3 years ago
- IS mapping software☆54Updated 3 years ago
- Recombination-free trees☆58Updated last month
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆43Updated 2 years ago