Repo for Proksee Cmd Line Tools
☆29Feb 22, 2023Updated 3 years ago
Alternatives and similar repositories for proksee-cmd
Users that are interested in proksee-cmd are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Processing support for Greengenes2☆14Jul 31, 2023Updated 2 years ago
- Build a map of genes present across a set of microbial genomes☆18Jan 23, 2026Updated 3 months ago
- Bacterial analysis toolbox for full ESKAPE pathogen characterization and profiling the resistome, mobilome, virulome & phylogenomics usin…☆26Jan 30, 2025Updated last year
- CGView.js creates interactive circular and linear genome maps.☆46Apr 10, 2026Updated 2 weeks ago
- Program for finding horizontal gene transfer using BLAST result☆11May 26, 2023Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A tool to easily create informative genomic feature plots☆17Dec 26, 2022Updated 3 years ago
- Finding regions of similarity between plasmids☆17Nov 2, 2022Updated 3 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆52Dec 22, 2024Updated last year
- "Reads to report" for public health and clinical microbiology☆142Dec 9, 2025Updated 4 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆633Feb 18, 2026Updated 2 months ago
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15May 24, 2023Updated 2 years ago
- code repo for mobileOG-db☆46Nov 6, 2025Updated 5 months ago
- PRONAME is an open-source bioinformatics pipeline that allows processing and significantly increasing the accuracy of Nanopore metabarcod…☆17Dec 30, 2025Updated 3 months ago
- ☆42Apr 2, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- GraphSNP: Using graph approach to investigate outbreak cluster and transmission in a web browser☆12Oct 5, 2025Updated 6 months ago
- transposable element typing pipeline☆19Mar 8, 2024Updated 2 years ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated last year
- MAG Circularization Method☆33Nov 4, 2025Updated 5 months ago
- Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram☆13Mar 10, 2026Updated last month
- Prediction of microbial interactions in complex communities☆11Aug 14, 2024Updated last year
- ☆12Oct 3, 2023Updated 2 years ago
- CGView is a Java package for generating high-quality, zoomable maps of circular genomes.☆55Mar 2, 2026Updated last month
- Automated pipeline for whole bacterial genome analysis based on snakemake☆12May 16, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- a collection of scripts for organising bacterial genomes by species☆81Mar 18, 2022Updated 4 years ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆106Jan 22, 2026Updated 3 months ago
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆21Dec 9, 2025Updated 4 months ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Apr 11, 2018Updated 8 years ago
- Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.☆32Apr 10, 2026Updated 2 weeks ago
- BRIG is a cross-platform (Windows/Mac/Linux) application that displays circular comparison images of multiple genomes using BLAST.☆47Apr 4, 2026Updated 3 weeks ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆63Oct 10, 2023Updated 2 years ago
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆63Mar 3, 2026Updated last month
- Convert genbank files to a swath of other formats☆30Mar 3, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆38Apr 14, 2022Updated 4 years ago
- ☆19Dec 7, 2020Updated 5 years ago
- A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concat…☆60Dec 5, 2025Updated 4 months ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆402Mar 16, 2026Updated last month
- Making whole bacterial genome sequencing data analysis easy☆113Apr 22, 2025Updated last year
- A method for reconstruction of subspecies composition and functional profiles from metagenomic data☆13May 27, 2024Updated last year
- ☆61Mar 30, 2026Updated 3 weeks ago