Alternatives and similar repositories for meta-proteome-analyzer

Users that are interested in meta-proteome-analyzer are comparing it to the libraries listed below

• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆76Updated 3 years ago
• xia-lab / MicrobiomeAnalystR
  A companion R package for the MicrobiomeAnalyst web server
  ☆130Updated last week
• hzi-bifo / RiboDetector
  Accurate and rapid RiboRNA sequences Detector based on deep learning
  ☆116Updated last month
• biocore / mmvec
  Neural networks for microbe-metabolite interaction analysis
  ☆126Updated 3 years ago
• biocore / tcga
  Microbial analysis in TCGA data
  ☆94Updated last year
• linsalrob / fastq-pair
  Match up paired end fastq files quickly and efficiently.
  ☆153Updated last year
• shenwei356 / perfect-bioinformatic-tools
  What should perfect bioinformatic tools be like?
  ☆143Updated 2 months ago
• HadrienG / tutorials
  Various bioinformatics tutorials
  ☆62Updated 2 years ago
• waldronlab / curatedMetagenomicData
  Curated Metagenomic Data of the Human Microbiome
  ☆149Updated 2 months ago
• rajewsky-lab / mirdeep2
  Discovering known and novel miRNAs from small RNA sequencing data
  ☆158Updated last month
• biobakery / biobakery_workflows
  bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…
  ☆130Updated 2 months ago
• melbournebioinformatics / melbournebioinformatics.github.io
  Melbourne Bioinformatics documentation in markdown format
  ☆120Updated this week
• biobakery / kneaddata
  Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.
  ☆141Updated 3 weeks ago
• Gibbons-Lab / isb_course_2020
  Materials and tutorials for the 2020 ISB Microbiome Course
  ☆31Updated 3 years ago
• EBI-Metagenomics / genomes-catalogue-pipeline
  MGnify genome analysis pipeline
  ☆108Updated this week
• ShiLab-Bioinformatics / subread
  The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…
  ☆52Updated 2 years ago
• aryeelab / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆80Updated 2 years ago
• jotech / gapseq
  Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
  ☆201Updated this week
• grimmlab / MicrobiomeBestPracticeReview
  Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
  ☆123Updated last year
• LJI-Bioinformatics / Excel-Reverse-Complement
  A simple add-in for Excel supplying functions to calculate the reverse, complement, and reverse-complement of a nucleotide sequence
  ☆45Updated 3 years ago
• biobakery / Maaslin2
  MaAsLin2: Microbiome Multivariate Association with Linear Models
  ☆152Updated 3 weeks ago
• hoelzer-lab / rnaflow
  A simple RNA-Seq differential gene expression pipeline using Nextflow
  ☆100Updated 5 months ago
• zhxiaokang / RASflow
  RNA-Seq analysis workflow
  ☆105Updated 4 years ago
• victoriapascal / gutsmash
  gutSMASH
  ☆57Updated 3 months ago
• signalbash / how_are_we_stranded_here
  Check strandedness of RNA-Seq fastq files
  ☆128Updated 3 years ago
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆92Updated 5 months ago
• borenstein-lab / microbiome-metabolome-curated-data
  ☆77Updated last year
• ssayols / rrvgo
  Reduce + Visualize Gene Ontology
  ☆35Updated 5 months ago
• nf-core / differentialabundance
  Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
  ☆87Updated this week
• louiejtaylor / grabseqs
  A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
  ☆109Updated 4 months ago