MetaProteomeAnalyzer (MPA) software for analyzing and visualizing MS-based metaproteomics data.
☆34Aug 25, 2020Updated 6 years ago
Alternatives and similar repositories for meta-proteome-analyzer
Users that are interested in meta-proteome-analyzer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ProteoStorm: An Ultrafast Metaproteomics Database Search Framework☆11Jul 15, 2023Updated 3 years ago
- Highly adaptable common interface for proteomics search and de novo engines☆48Aug 15, 2025Updated last year
- 🌐 Unipept frontend for metaproteomics data analysis☆26Updated this week
- Find Co-Abundant Groups of Genes☆12Aug 3, 2020Updated 6 years ago
- Graphical user interface for de novo sequencing of tandem mass spectra☆16Mar 11, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- De novo peptide sequencing for DDA and DIA by deep learning☆41Nov 26, 2020Updated 5 years ago
- A Shiny-based server framework for retrieving, analyzing and visualizing the large genomic variations data in a lab.☆21Oct 28, 2024Updated 2 years ago
- SUmmarizing Multiple Enrichment analysis Results☆10Nov 14, 2024Updated last year
- Machine learning, computer vision, statistics and general scientific computing for Android and Java☆23Nov 26, 2014Updated 11 years ago
- Mistle is a fast spectral search engine. It uses a fragment-indexing technique and SIMD intrinsics to match experimental MS2 spectra to l…☆15Oct 6, 2023Updated 3 years ago
- R package for analysing proteomics data☆49Apr 17, 2023Updated 3 years ago
- A list of tools on proteomics using deep learning☆111May 14, 2026Updated 5 months ago
- ☆12Mar 23, 2022Updated 4 years ago
- A Python3-base pipeline for translated circular RNA(circRNA) identification☆22Oct 4, 2025Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Precise, genome-scale, personalized, and sample-specific proteogenomic analysis☆12Nov 17, 2023Updated 2 years ago
- An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.☆95Nov 17, 2025Updated 11 months ago
- A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file☆34Apr 19, 2021Updated 5 years ago
- A knowledge resource on cell lines - From SIB CALIPHO group☆14Jan 31, 2024Updated 2 years ago
- Semi-supervised learning for peptide identification from shotgun proteomics datasets☆144May 21, 2026Updated 5 months ago
- import information (affiliation, education) from ORCID database to Wikidata regarding authors of scientific papers☆16May 25, 2023Updated 3 years ago
- Protein Identification with Deep Learning☆104Nov 27, 2020Updated 5 years ago
- ☆27Jul 28, 2025Updated last year
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆45Feb 23, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A tool for large scale omics datasets evaluation☆27Jun 14, 2023Updated 3 years ago
- Intra-species bacterial contamination detection☆26Jul 10, 2026Updated 3 months ago
- A set of programs for the taxonomic analysis of genetic sequences☆15Jun 12, 2023Updated 3 years ago
- RapiDoc UI integration for R☆14Nov 17, 2023Updated 2 years ago
- A guide to running MaxQuant in Linux☆35Feb 10, 2020Updated 6 years ago
- R Package for Data Version Control (DVC)☆11Mar 2, 2021Updated 5 years ago
- A collection of available Python tools for Proteomics analysis☆70Jan 31, 2026Updated 9 months ago
- This is a collection of minimal code to visualize various aspects of proteomics data.☆87Jan 6, 2022Updated 4 years ago
- PDV: an integrative proteomics data viewer☆68Sep 22, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- xnet: a package for supervised network prediction☆11Apr 15, 2022Updated 4 years ago
- PriOritizing the Candidate genes by incorporating information of Knowledge-based gene sets, Effects of variants, GWAS and TWAS☆11May 14, 2021Updated 5 years ago
- Core Hunter 3: a flexible core subset selection tool☆10Sep 11, 2025Updated last year
- DeepLC: Retention time prediction for peptides carrying any modification.☆81Oct 25, 2026Updated last week
- Dirichlet-Multinomial Bayesian Variable Selection☆14Oct 11, 2026Updated 3 weeks ago
- LMAS - Last (Meta)Genomic Assembler Standing☆12Dec 21, 2022Updated 3 years ago
- Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.☆22May 27, 2022Updated 4 years ago