Alternatives and similar repositories for meta-proteome-analyzer

Users that are interested in meta-proteome-analyzer are comparing it to the libraries listed below

• xia-lab / MicrobiomeAnalystR
  A companion R package for the MicrobiomeAnalyst web server
  ☆127Updated last week
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆76Updated 3 years ago
• biocore / mmvec
  Neural networks for microbe-metabolite interaction analysis
  ☆125Updated 3 years ago
• melbournebioinformatics / MelBioInf_docs
  Melbourne Bioinformatics documentation in markdown format
  ☆120Updated last week
• nf-core / smrnaseq
  A small-RNA sequencing analysis pipeline
  ☆97Updated 5 months ago
• borenstein-lab / microbiome-metabolome-curated-data
  ☆76Updated last year
• htseq / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆107Updated 5 months ago
• hzi-bifo / RiboDetector
  Accurate and rapid RiboRNA sequences Detector based on deep learning
  ☆115Updated last year
• biocore / tcga
  Microbial analysis in TCGA data
  ☆92Updated last year
• rajewsky-lab / mirdeep2
  Discovering known and novel miRNAs from small RNA sequencing data
  ☆154Updated last year
• HadrienG / tutorials
  Various bioinformatics tutorials
  ☆61Updated 2 years ago
• waldronlab / curatedMetagenomicData
  Curated Metagenomic Data of the Human Microbiome
  ☆143Updated 2 weeks ago
• LJI-Bioinformatics / Excel-Reverse-Complement
  A simple add-in for Excel supplying functions to calculate the reverse, complement, and reverse-complement of a nucleotide sequence
  ☆45Updated 3 years ago
• shenwei356 / perfect-bioinformatic-tools
  What should perfect bioinformatic tools be like?
  ☆141Updated 2 weeks ago
• EBI-Metagenomics / genomes-catalogue-pipeline
  MGnify genome analysis pipeline
  ☆109Updated this week
• hoelzer-lab / rnaflow
  A simple RNA-Seq differential gene expression pipeline using Nextflow
  ☆100Updated 3 months ago
• aryeelab / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆80Updated 2 years ago
• pegi3s / dockerfiles
  This repository contains Docker files for the images maintained by the Phenotypic Evolution Group at the Institute for Molecular and Cell…
  ☆53Updated this week
• jotech / gapseq
  Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
  ☆191Updated this week
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆149Updated last week
• novoalab / Nano-tRNAseq
  Quantitative analysis of native tRNA populations using direct RNA nanopore sequencing (Lucas*, Pryszcz* et al., Nat Biotech 2023)
  ☆16Updated last year
• ewels / sra-explorer
  Web application to explore the Sequence Read Archive.
  ☆217Updated 4 months ago
• bpucker / PythonTUBS
  Python introduction for life scientists
  ☆46Updated 6 months ago
• ssayols / rrvgo
  Reduce + Visualize Gene Ontology
  ☆34Updated 3 months ago
• zhxiaokang / RASflow
  RNA-Seq analysis workflow
  ☆105Updated 4 years ago
• louiejtaylor / grabseqs
  A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
  ☆109Updated 3 months ago
• miinslin / ProteoStorm
  ProteoStorm: An Ultrafast Metaproteomics Database Search Framework
  ☆11Updated 2 years ago
• BioOmics / iSeq
  Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.
  ☆221Updated 3 weeks ago
• ZihaoShu / Tax4Fun2
  This is an unofficial repo for Tax4Fun2
  ☆26Updated 3 years ago
• linsalrob / fastq-pair
  Match up paired end fastq files quickly and efficiently.
  ☆152Updated last year