Alternatives and similar repositories for MSqRob

Users that are interested in MSqRob are comparing it to the libraries listed below

• MonashBioinformaticsPlatform / LFQ-Analyst
  The repo for LFQ-Analyst
  ☆30Updated last year
• lgatto / RforProteomics
  Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
  ☆99Updated 5 months ago
• fgcz / prolfqua
  Differential Expression Analysis tool box R lang package for omics data
  ☆47Updated last month
• jpquast / protti
  Picotti lab data analysis package.
  ☆66Updated 2 weeks ago
• Vitek-Lab / MSstats
  R package - MSstats
  ☆89Updated last week
• Proteomicslab57357 / UniprotR
  Retrieving Information of Proteins from Uniprot
  ☆72Updated last year
• yafeng / DEqMS
  DEqMS is a tool for quantitative proteomic analysis
  ☆24Updated 9 months ago
• cbielow / PTXQC
  A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant
  ☆47Updated 6 months ago
• cpanse / protViz
  Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
  ☆11Updated 8 months ago
• jorainer / metabolomics2018
  Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.
  ☆28Updated 2 years ago
• ComputationalProteomics / NormalyzerDE
  Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.
  ☆26Updated this week
• lgatto / MSnbase
  Base Classes and Functions for Mass Spectrometry and Proteomics
  ☆136Updated 5 months ago
• rformassspectrometry / QFeatures
  Quantitative features for mass spectrometry data
  ☆29Updated 3 weeks ago
• bartongroup / Proteus
  R package for analysing proteomics data
  ☆50Updated 2 years ago
• tidymass / tidymass
  tidymass
  ☆60Updated 2 weeks ago
• rformassspectrometry / metaRbolomics-book
  The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.
  ☆34Updated 4 years ago
• Vitek-Lab / MSstatsTMT
  R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …
  ☆29Updated 6 months ago
• pmartR / pmartR
  The pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of ma…
  ☆48Updated this week
• Vitek-Lab / MSstatsShiny
  R-Shiny GUI integrated with the MSstats package family
  ☆19Updated this week
• bigbio / pmultiqc
  A library for QC report based on MultiQC framework
  ☆27Updated 2 weeks ago
• broadinstitute / protigy
  Proteomics Toolset for Integrative Data Analysis
  ☆26Updated 4 months ago
• arnesmits / DEP
  DEP package
  ☆30Updated 3 years ago
• wenbostar / PDV
  PDV: an integrative proteomics data viewer
  ☆60Updated this week
• const-ae / proDA
  Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/
  ☆22Updated 2 years ago
• YanglabWCH / StatsPro
  StatsPro : systematic integration and evaluation of statistical approaches for detecting differential expression in label-free quantitat…
  ☆13Updated 3 years ago
• broadinstitute / PANOPLY
  Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…
  ☆38Updated last month
• sneumann / mzR
  This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data…
  ☆46Updated last month
• brennanpincardiff / drawProteins
  Creating package to draw proteins from Uniprot API
  ☆35Updated last week
• jessegmeyerlab / proteomics-tutorial
  ☆68Updated last year
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆50Updated 6 years ago