Alternatives and similar repositories for MSqRob

Users that are interested in MSqRob are comparing it to the libraries listed below

• MonashBioinformaticsPlatform / LFQ-Analyst
  The repo for LFQ-Analyst
  ☆30Updated last year
• lgatto / RforProteomics
  Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
  ☆95Updated last week
• fgcz / prolfqua
  Differential Expression Analysis tool box R lang package for omics data
  ☆45Updated this week
• bartongroup / Proteus
  R package for analysing proteomics data
  ☆49Updated 2 years ago
• cbielow / PTXQC
  A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant
  ☆46Updated last month
• yafeng / DEqMS
  DEqMS is a tool for quantitative proteomic analysis
  ☆23Updated 4 months ago
• cpanse / protViz
  Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
  ☆11Updated 2 months ago
• Vitek-Lab / MSstats
  R package - MSstats
  ☆86Updated last week
• jpquast / protti
  Picotti lab data analysis package.
  ☆64Updated 4 months ago
• Proteomicslab57357 / UniprotR
  Retrieving Information of Proteins from Uniprot
  ☆68Updated last year
• jorainer / metabolomics2018
  Workshop illustrating mass spectrometry data analysis in R and use of the updated xcms functionality for the preprocessing of LC-MS data.
  ☆28Updated 2 years ago
• tidymass / tidymass
  tidymass
  ☆57Updated last week
• lgatto / MSnbase
  Base Classes and Functions for Mass Spectrometry and Proteomics
  ☆134Updated last week
• sneumann / mzR
  This is the git repository matching the Bioconductor package mzR: parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data…
  ☆45Updated 2 weeks ago
• rformassspectrometry / metaRbolomics-book
  The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.
  ☆33Updated 4 years ago
• rformassspectrometry / QFeatures
  Quantitative features for mass spectrometry data
  ☆27Updated 3 months ago
• YanglabWCH / StatsPro
  StatsPro : systematic integration and evaluation of statistical approaches for detecting differential expression in label-free quantitat…
  ☆13Updated 3 years ago
• barupal / ChemRICH
  Chemical Similarity Enrichment analysis of metabolomics datasets
  ☆29Updated last year
• Vitek-Lab / MSstatsTMT
  R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …
  ☆29Updated 3 weeks ago
• const-ae / proDA
  Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/
  ☆21Updated last year
• pmartR / pmartR
  The pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of ma…
  ☆46Updated 2 weeks ago
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆50Updated 6 years ago
• brennanpincardiff / drawProteins
  Creating package to draw proteins from Uniprot API
  ☆34Updated last year
• singha53-zz / diablo
  DIABLO - an integrative multi-group, multi-dataset classification method
  ☆25Updated 6 years ago
• DavisLaboratory / msImpute
  Methods for label-free mass spectrometry proteomics
  ☆15Updated 5 months ago
• YuLab-SMU / DOSE
  Disease Ontology Semantic and Enrichment analysis
  ☆119Updated 4 months ago
• xia-lab / MetaboAnalyst_Docker
  Docker for MetaboAnalyst 4.0
  ☆24Updated 4 years ago
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆63Updated last month
• ahmohamed / lipidr
  Data Mining and Analysis of Lipidomics datasets in R
  ☆30Updated 2 years ago
• atc3 / maxquant_linux_guide
  A guide to running MaxQuant in Linux
  ☆34Updated 5 years ago