Robust statistical inference for quantitative LC-MS proteomics
☆33Dec 6, 2022Updated 3 years ago
Alternatives and similar repositories for MSqRob
Users that are interested in MSqRob are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code☆26Jun 5, 2026Updated last month
- Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics☆11Jun 3, 2025Updated last year
- Computational analysis for mass spectrometry-based proteomics data☆11Apr 25, 2016Updated 10 years ago
- A library for QC report based on MultiQC framework☆34Updated this week
- Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics☆25Apr 8, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Differential Expression Analysis tool box R lang package for omics data☆46Jul 10, 2026Updated last week
- amica: an interactive and user-friendly web-based platform for the analysis of proteomics data☆28Mar 30, 2026Updated 3 months ago
- An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics☆34Mar 21, 2026Updated 4 months ago
- A modular JavaScript viewer for mass spectrometry data☆12May 20, 2022Updated 4 years ago
- This repository attempts to implement a neural net that leverages the transformer architecture to predict peptide properties (retention t…☆11Nov 22, 2024Updated last year
- Base Classes and Functions for Mass Spectrometry and Proteomics☆137Jul 14, 2026Updated last week
- A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant☆47Updated this week
- Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package☆37May 1, 2024Updated 2 years ago
- PyProphet: Semi-supervised learning and scoring of OpenSWATH results.☆31Jun 18, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An LC-MS/MS glycan and glycopeptide search engine☆14Sep 15, 2025Updated 10 months ago
- Proteogenomics database-generation tool for protein haplotypes and variants☆12Jun 19, 2025Updated last year
- Visualization of multiple tandem mass spectrometry data☆10Jun 15, 2020Updated 6 years ago
- LIMMA (an empirical Bayes method) pipeline for two group comparison in a proteomic experiment☆32Nov 23, 2023Updated 2 years ago
- Methods for label-free mass spectrometry proteomics☆15May 13, 2026Updated 2 months ago
- MSDK source code repository☆41Sep 22, 2022Updated 3 years ago
- A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file☆33Apr 19, 2021Updated 5 years ago
- MSLibrarian is an R-package to optimize predicted spectral libraries for DIA proteomics☆14Aug 25, 2022Updated 3 years ago
- R package PCAtest for evaluating the statistical significance of PCA analysis, selecting number of significant PC axes, and testing the c…☆22Oct 18, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization☆22Apr 28, 2026Updated 2 months ago
- Predicting glycan structure from LC-MS/MS data☆36Jun 17, 2026Updated last month
- pathway and network analysis for metabolomics☆44Dec 8, 2025Updated 7 months ago
- Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/☆23Apr 1, 2026Updated 3 months ago
- Semi-supervised learning for peptide identification from shotgun proteomics datasets☆142May 21, 2026Updated 2 months ago
- SDRF official validator and converts SDRF to pipeline configuration files☆36Jul 11, 2026Updated last week
- A Python implementation of Baffling Recursive Algorithm for Isotopic distributioN calculations☆23May 22, 2025Updated last year
- Some hopefully useful tools for mass spectrometry applied to proteomics☆53Oct 12, 2021Updated 4 years ago
- ☆17Jul 20, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆32May 27, 2026Updated last month
- R Interfaces to Phylogenetic Software☆12Jun 25, 2026Updated 3 weeks ago
- ☆26Updated this week
- An R package for ECM molecule annotation, classification, and analysis☆14Sep 20, 2024Updated last year
- draw rectangular statistical cartograms - CRAN package☆23Apr 2, 2026Updated 3 months ago
- Python script for calling SNPs, MNPs, and indels in mitochondrial DNA.☆10Apr 19, 2016Updated 10 years ago
- Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)☆24Jul 6, 2023Updated 3 years ago