Alternatives and similar repositories for MSstatsConvert:

Users that are interested in MSstatsConvert are comparing it to the libraries listed below

• rformassspectrometry / QFeatures
  Quantitative features for mass spectrometry data
  ☆27Updated last month
• DavisLaboratory / msImpute
  Methods for label-free mass spectrometry proteomics
  ☆15Updated last month
• arnesmits / DEP
  DEP package
  ☆28Updated 2 years ago
• Vitek-Lab / MSstatsShiny
  R-Shiny GUI integrated with the MSstats package family
  ☆15Updated 3 months ago
• rformassspectrometry / metaRbolomics-book
  The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.
  ☆33Updated 4 years ago
• pcastellanoescuder / POMA
  Omics Data Analysis Tools
  ☆11Updated 5 months ago
• joannawolthuis / MetaboShiny
  Repository for MetaboShiny, a novel R and RShiny based metabolomics data analysis package.
  ☆17Updated 3 weeks ago
• jeffsocal / tidyproteomics
  An S3 data object and framework for common quantitative proteomic analyses
  ☆40Updated this week
• broadinstitute / protigy
  Proteomics Toolset for Integrative Data Analysis
  ☆22Updated 3 weeks ago
• cox-labs / PerseusR
  R package for easy interop between Perseus and R
  ☆14Updated 2 years ago
• Vitek-Lab / MSstatsTMT
  R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …
  ☆29Updated 2 months ago
• pnnl / leapR
  ☆17Updated this week
• MASHUOA / HiTMaP
  An R package of High-resolution Informatics Toolbox for Maldi-imaging Proteomics
  ☆18Updated 2 months ago
• WandeRum / MVI-evaluation
  Missing value imputation and evaluation, especially for metabolomics data sets
  ☆19Updated 6 years ago
• MRCIEU / metaboprep
  a pipeline of metabolomics data processing and quality control
  ☆25Updated last year
• statOmics / msqrob2
  Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure
  ☆12Updated 2 months ago
• ipb-halle / MetFragR
  R package for MetFrag
  ☆24Updated 7 years ago
• stemangiola / tidySummarizedExperiment
  Brings SummarizedExperiment to the tidyverse
  ☆26Updated 11 months ago
• stemangiola / tidySingleCellExperiment
  Brings SingleCellExperiment objects to the tidyverse
  ☆36Updated 4 months ago
• waldronlab / MultiAssayExperiment
  Bioconductor package for management of multi-assay data
  ☆72Updated this week
• Vitek-Lab / MSstats
  R package - MSstats
  ☆82Updated last week
• fgcz / prolfqua
  Differential Expression Analysis tool box R lang package for omics data
  ☆45Updated last month
• federicomarini / GeneTonic
  Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
  ☆78Updated this week
• waldronlab / SingleCellMultiModal
  Single Cell multimodal data scripts for downloading datasets
  ☆17Updated 3 weeks ago
• MonashBioinformaticsPlatform / LFQ-Analyst
  The repo for LFQ-Analyst
  ☆30Updated 9 months ago
• wangshisheng / NAguideR
  NAguideR: performing and prioritizing missing value imputations for consistent bottom-up proteomic analyses
  ☆44Updated 3 years ago
• pcastellanoescuder / POMAShiny
  Web-based User-friendly Workflow for Metabolomics and Proteomics Data Analysis
  ☆18Updated 2 years ago
• krumsieklab / maplet
  R statistical toolbox for metabolomics
  ☆20Updated 3 weeks ago
• YanglabWCH / StatsPro
  StatsPro : systematic integration and evaluation of statistical approaches for detecting differential expression in label-free quantitat…
  ☆12Updated 3 years ago
• const-ae / proDA
  Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/
  ☆20Updated last year