Alternatives and similar repositories for MSstatsConvert

Users that are interested in MSstatsConvert are comparing it to the libraries listed below

• rformassspectrometry / QFeatures
  Quantitative features for mass spectrometry data
  ☆27Updated last week
• pcastellanoescuder / POMA
  Omics Data Analysis Tools
  ☆11Updated 6 months ago
• arnesmits / DEP
  DEP package
  ☆28Updated 2 years ago
• cox-labs / PerseusR
  R package for easy interop between Perseus and R
  ☆14Updated 2 years ago
• Vitek-Lab / MSstatsShiny
  R-Shiny GUI integrated with the MSstats package family
  ☆15Updated 2 weeks ago
• DavisLaboratory / msImpute
  Methods for label-free mass spectrometry proteomics
  ☆15Updated 2 months ago
• federicomarini / GeneTonic
  Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
  ☆78Updated 3 weeks ago
• jeffsocal / tidyproteomics
  An S3 data object and framework for common quantitative proteomic analyses
  ☆41Updated last week
• Vitek-Lab / MSstatsTMT
  R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass …
  ☆29Updated 3 months ago
• wangshisheng / NAguideR
  NAguideR: performing and prioritizing missing value imputations for consistent bottom-up proteomic analyses
  ☆47Updated 2 weeks ago
• statOmics / msqrob2
  Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure
  ☆12Updated last week
• joannawolthuis / MetaboShiny
  Repository for MetaboShiny, a novel R and RShiny based metabolomics data analysis package.
  ☆17Updated last month
• waldronlab / ProjectAsPackage
  Demonstration of the use of an R package to organize a data analysis project
  ☆21Updated 5 years ago
• rformassspectrometry / metaRbolomics-book
  The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.
  ☆33Updated 4 years ago
• CRI-iAtlas / shiny-iatlas
  An interactive web portal for exploring immuno-oncology data. This repo now superseded by iatlas-app
  ☆49Updated 4 years ago
• cmap / morpheus.R
  R interface to morpheus.js heatmap widget
  ☆38Updated 4 years ago
• kuppal2 / xMWAS
  ☆13Updated 6 months ago
• cpanse / protViz
  Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
  ☆11Updated this week
• ipb-halle / MetFragR
  R package for MetFrag
  ☆24Updated 7 years ago
• lcolladotor / biocthis
  Automate package and project setup for Bioconductor packages
  ☆53Updated 2 months ago
• ahmohamed / lipidr
  Data Mining and Analysis of Lipidomics datasets in R
  ☆30Updated 2 years ago
• pcastellanoescuder / POMAShiny
  Web-based User-friendly Workflow for Metabolomics and Proteomics Data Analysis
  ☆18Updated 2 years ago
• broadinstitute / protigy
  Proteomics Toolset for Integrative Data Analysis
  ☆22Updated 2 months ago
• enriquea / feseR
  feseR: Combining feature selection methods for analyzing omics data
  ☆16Updated 3 months ago
• rwehrens / BatchCorrMetabolomics
  Supplementary material for the paper "Improved batch correction in untargeted MS-based metabolomics" by R. Wehrens, et al. Metabolomics, …
  ☆15Updated 6 years ago
• waldronlab / MultiAssayExperiment
  Bioconductor package for management of multi-assay data
  ☆72Updated last month
• pnnl / leapR
  ☆17Updated last week
• drisso / ThrivingInBioinformatics
  ☆10Updated 4 years ago
• stemangiola / tidySummarizedExperiment
  Brings SummarizedExperiment to the tidyverse
  ☆26Updated last year
• WandeRum / MVI-evaluation
  Missing value imputation and evaluation, especially for metabolomics data sets
  ☆18Updated 6 years ago