pwilmart / TMT_analysis_examples
Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.
☆21Updated 2 years ago
Alternatives and similar repositories for TMT_analysis_examples:
Users that are interested in TMT_analysis_examples are comparing it to the libraries listed below
- R package for analysing proteomics data☆49Updated last year
- python scripts for proteogenomics analysis☆10Updated 5 years ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆59Updated 2 weeks ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆33Updated 10 months ago
- MS-DAP: downstream analysis pipeline for quantitative proteomics☆34Updated last month
- Absolute quantification package based on quantms.io☆13Updated last month
- ☆38Updated 3 weeks ago
- DEqMS is a tool for quantitative proteomic analysis☆23Updated 3 months ago
- Imputation of missing values of a matrix or data.frame using iterative prediction model☆32Updated 3 weeks ago
- ☆26Updated 2 months ago
- ☆23Updated 8 years ago
- SCeptre is a python package that extends the functionalities of Scanpy to analyze multiplexed single-cell proteomics data.☆13Updated last year
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆34Updated this week
- Code related to the Celligner manuscript☆46Updated 4 years ago
- An r package for proteomics data Analysis, developed from DEP.☆29Updated last week
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆91Updated 4 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆21Updated last year
- Score an Affinity Purification Mass Spectrometry Proteomics Experiment for Interactor Confidence☆10Updated 9 years ago
- The repo for LFQ-Analyst☆29Updated 7 months ago
- A tool for large scale omics datasets evaluation☆24Updated last year
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆31Updated 4 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆49Updated 5 years ago
- R package for the analysis of single-cell immune repertoires☆42Updated last month
- CLUMPS adapted to post-translational modifications.☆9Updated last year
- A Comprehensive R Package For Analyzing Quantitative Phosphoproteomics Data☆12Updated 2 years ago
- ☆64Updated last year
- ☆37Updated 2 years ago
- An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.☆21Updated last year
- tidymass☆54Updated last year
- ☆11Updated 5 years ago