A Shiny-based framework to analyze and visualize interactively genomic data
☆11May 11, 2023Updated 3 years ago
Alternatives and similar repositories for ChroKit
Users that are interested in ChroKit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Paired Replicate Analysis of Allelic Differential Splicing Events☆12Feb 21, 2023Updated 3 years ago
- Exploring Isoform-specific interactions☆13Sep 16, 2025Updated 8 months ago
- ExTraMapper is a tool to find Exon and Transcript-level Mappings of a given pair of orthologous genes between two organisms using sequenc…☆11Apr 20, 2022Updated 4 years ago
- Source code for iDeLUCS. An interactive deep-learning based tool for clustering of genomic sequences☆15Jul 18, 2024Updated last year
- Tutorial for using MCMCTree as implemented by Brown Lab at SIUC. For divergence time estimation on UCE datasets, for dendrobatid frogs.☆10Jun 19, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A shiny app for metacell analysis☆10Updated this week
- ORF Quantification pipeline for Alternative Splicing☆16May 11, 2021Updated 5 years ago
- LorMe package for R：Lightening One-code Resolving Microbial Ecology Program☆15Jan 13, 2026Updated 4 months ago
- An R package for Splice-aware quantification of translation using Ribo-seq data☆19Dec 20, 2023Updated 2 years ago
- Junction centric alternative splicing translator☆22Oct 31, 2022Updated 3 years ago
- The shiny app that accompanies the ngsReports R package☆13Jun 10, 2021Updated 4 years ago
- SelectiOn in PRotein ANnotated regiOns. Adapted dN/dS based method to detect selection in specific protein regions☆11May 2, 2024Updated 2 years ago
- TEspeX - pipeline for Transposable Elements expression quantification☆22Aug 24, 2023Updated 2 years ago
- GWAS and rare variants tests at high speed using regenie☆16Feb 18, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- R interface to megadepth: BigWig and BAM related utilities☆14Mar 31, 2026Updated last month
- Analysis pipeline to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and …☆20May 5, 2026Updated 2 weeks ago
- Model-based analysis of APA using 3' end-linked reads☆12Aug 14, 2021Updated 4 years ago
- ☆12Feb 19, 2021Updated 5 years ago
- ☆11May 4, 2021Updated 5 years ago
- Find CpG islands in genome☆11Mar 27, 2020Updated 6 years ago
- Lightweight Alignment Based Resolution of Alternative Three Prime Ends☆10Jan 26, 2024Updated 2 years ago
- Code and data used to create the JASPAR UCSC Genome Browser tracks data hub☆18Dec 11, 2025Updated 5 months ago
- Code for the meQTL analyses presented in Hawe et al. 2021 Nature Genetics☆14Jan 14, 2022Updated 4 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Python SSHA hash generator and validator with debugging features☆12Feb 11, 2020Updated 6 years ago
- CircSplice☆11Feb 27, 2019Updated 7 years ago
- A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics☆14Jan 9, 2026Updated 4 months ago
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆16Sep 10, 2024Updated last year
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44May 11, 2017Updated 9 years ago
- ☆15May 12, 2019Updated 7 years ago
- APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach…☆13Apr 5, 2026Updated last month
- Iso-Seq reads simulator for PacBio and ONT full-length isoform sequencing technologies☆16Mar 1, 2022Updated 4 years ago
- interactive Multi Objective K-mer Analysis☆24Mar 5, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks☆10Feb 16, 2022Updated 4 years ago
- Examples of kallisto + sleuth☆11May 18, 2017Updated 9 years ago
- Conversion of a BAM alignment to wiggle and bigwig coverage files, with flexible reporting options☆16May 7, 2019Updated 7 years ago
- ☆16Jan 24, 2023Updated 3 years ago
- Pure Elixir HTTP implementation☆19May 13, 2026Updated last week
- dcHiC: Differential compartment analysis for Hi-C datasets☆74Jan 10, 2024Updated 2 years ago
- an R/Shiny application for interactive creation of Circos plot☆50Apr 5, 2023Updated 3 years ago