ocroci / ChroKitLinks
A Shiny-based framework to analyze and visualize interactively genomic data
☆11Updated 2 years ago
Alternatives and similar repositories for ChroKit
Users that are interested in ChroKit are comparing it to the libraries listed below
Sorting:
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- End-guided RNA assembler☆15Updated 2 weeks ago
- Analyse RNA feature distributions.☆17Updated 11 months ago
- ☆22Updated 3 months ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- ExTraMapper is a tool to find Exon and Transcript-level Mappings of a given pair of orthologous genes between two organisms using sequenc…☆11Updated 3 years ago
- ☆20Updated 3 years ago
- lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…☆13Updated 2 years ago
- ☆17Updated 4 months ago
- ☆23Updated 4 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Updated 3 years ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆21Updated 8 months ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 6 years ago
- Long read to rMATS☆32Updated 2 years ago
- TQSLE v1.0 released☆10Updated 2 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated last month
- R package for DNA methylation analysis☆19Updated last year
- ☆10Updated 4 years ago
- ☆19Updated 2 years ago
- omics data analysis using clusterProfiler ;)☆15Updated last year
- Comprehensive and scalable differential splicing analyses☆17Updated 2 weeks ago
- IsoVis enables fast and informative visualization of isoform structures and expression levels.☆12Updated last month
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Updated 2 years ago
- ☆34Updated last week
- ☆18Updated last year
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆40Updated 3 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 6 months ago
- Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.☆18Updated 2 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆23Updated 2 years ago
- isoCirc☆10Updated last year