Alternatives and similar repositories for echolocatoR:

Users that are interested in echolocatoR are comparing it to the libraries listed below

• thewonlab / H-MAGMA
  ☆32Updated last year
• anastasia-lucas / hudson
  An R package for creating mirrored Manhattan plots
  ☆18Updated 2 years ago
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆21Updated 2 years ago
• Kyoko-wtnb / FUMA_scRNA_data
  Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)
  ☆23Updated 5 years ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆51Updated 3 months ago
• xtonyjiang / GNOVA
  A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.
  ☆28Updated 9 months ago
• xinhe-lab / ctwas
  package for the causal TWAS project
  ☆41Updated 3 weeks ago
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆46Updated 4 months ago
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆27Updated 10 months ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆31Updated 4 years ago
• clagiamba / moloc
  ☆34Updated 4 years ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆44Updated last year
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated 11 months ago
• yanglab-emory / TIGAR
  ☆21Updated 4 months ago
• xqwen / torus
  QTL Discovery using Annotations
  ☆24Updated 2 years ago
• cgrace1978 / manhplot
  Manhattan++
  ☆28Updated last year
• MRCIEU / PhenoSpD
  ☆18Updated 7 years ago
• powellgenomicslab / onek1k_phase1
  Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types
  ☆26Updated 3 years ago
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆33Updated 3 months ago
• jrs95 / gassocplot
  Regional association plots
  ☆26Updated 11 months ago
• Geeketics / LocusZooms
  Make LocusZoom-like plots with your own LD matrix.
  ☆39Updated 2 years ago
• boxiangliu / locuscompare
  LocusCompare is an interactive visualization tool for comparing two genetic association datasets.
  ☆21Updated last year
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42Updated 6 years ago
• myles-lewis / locuszoomr
  A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
  ☆40Updated last week
• wuyangf7 / OPERA
  This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…
  ☆35Updated 5 months ago
• siddhartha-kar / clonal-hematopoiesis
  This is the repository accompanying the pre-print titled, "Genome-wide analyses of 200,453 individuals yield new insights into the causes…
  ☆12Updated 2 years ago
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆45Updated last month
• single-cell-genetics / limix_qtl
  ☆20Updated 8 months ago
• NathanSkene / EWCE
  Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.
  ☆56Updated last month