Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
☆43Jan 20, 2023Updated 3 years ago
Alternatives and similar repositories for echolocatoR
Users that are interested in echolocatoR are comparing it to the libraries listed below
Sorting:
- Convert GWAS sumstat files into a common format with a common reference for positions, rsids and effect alleles.☆24Sep 4, 2025Updated 5 months ago
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Jun 27, 2023Updated 2 years ago
- Create LocusZoom-style plots in R.☆22Mar 5, 2023Updated 2 years ago
- Integration of TWAS and Colocalization Analysis☆17Oct 29, 2024Updated last year
- An R package for generating comparative regional association plots☆18Sep 30, 2025Updated 5 months ago
- LOGODetect is a powerful tool to identify small segments that harbor local genetic correlation between two traits/diseases.☆28Jul 30, 2025Updated 7 months ago
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆13Jul 2, 2025Updated 7 months ago
- Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)☆12Mar 24, 2023Updated 2 years ago
- Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).☆14Dec 23, 2022Updated 3 years ago
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆21Aug 19, 2025Updated 6 months ago
- ☆21Nov 15, 2024Updated last year
- GWAS-TWAS (Transcriptome-wide association study)-Pharmacological library integration pipeline☆19Mar 30, 2021Updated 4 years ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Oct 6, 2023Updated 2 years ago
- GPA: Genetic analysis incorporating Pleiotropy and Annotation☆16Feb 27, 2020Updated 6 years ago
- R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"☆16Oct 7, 2025Updated 4 months ago
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆35Sep 26, 2024Updated last year
- Leveraging functional information to improve GWAS summary statistic imputation☆19Aug 10, 2021Updated 4 years ago
- ☆24Jan 8, 2026Updated last month
- corrplot of LDSC genetic correlation results☆56Mar 16, 2022Updated 3 years ago
- Hypothesis Prioritisation in multi-trait Colocalization☆55Apr 8, 2024Updated last year
- An R package for Mendelian Randomization in Mediation setting☆17Mar 17, 2025Updated 11 months ago
- Fine mapping of genes associated with Parkinson's Disease using a variety of methods☆11Mar 7, 2022Updated 3 years ago
- ☆11Oct 14, 2022Updated 3 years ago
- ☆20Sep 12, 2025Updated 5 months ago
- A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics☆39Sep 18, 2025Updated 5 months ago
- Primo☆16Sep 2, 2021Updated 4 years ago
- Fine-mapping method only using summary statistics☆20Mar 23, 2016Updated 9 years ago
- Workflow for performing cistrome-wide associations studies☆11Jul 25, 2022Updated 3 years ago
- lhcMR☆26Mar 24, 2024Updated last year
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Sep 20, 2022Updated 3 years ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆42May 2, 2018Updated 7 years ago
- ☆15Apr 20, 2021Updated 4 years ago
- ☆57Jan 16, 2025Updated last year
- A collection of various utilities for GWAS summary statistics☆32May 14, 2024Updated last year
- Pleiotropy-informed conditional and conjunctional false discovery rate☆37Jun 3, 2025Updated 8 months ago
- R script that performs gene-set or gene property analysis using TWAS results.☆32Sep 11, 2024Updated last year
- R script to make Manhattan-style plot for TWAS☆41Aug 15, 2021Updated 4 years ago
- Perform cell-stratified MR analysis through integrating GWAS and QTL data☆35Jan 28, 2026Updated last month
- Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform …☆29Jun 18, 2023Updated 2 years ago