RajLabMSSM / echolocatoRLinks
Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
☆41Updated 2 years ago
Alternatives and similar repositories for echolocatoR
Users that are interested in echolocatoR are comparing it to the libraries listed below
Sorting:
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆35Updated 5 months ago
- Colocalization analysis of genetic association signals☆53Updated 5 months ago
- ☆35Updated 2 years ago
- Regional association plots☆25Updated last year
- An R package for creating mirrored Manhattan plots☆18Updated 3 years ago
- Make LocusZoom-like plots with your own LD matrix.☆47Updated 3 years ago
- This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…☆36Updated last year
- Create LocusZoom-style plots in R.☆22Updated 2 years ago
- Manhattan++☆28Updated last year
- ☆23Updated 3 months ago
- harmonization, liftover, and imputation of summary statistics from GWAS☆34Updated 5 years ago
- A collection of various utilities for GWAS summary statistics☆32Updated last year
- FOCUS: Fine-mapping Of CaUsal gene Sets☆47Updated 2 years ago
- corrplot of LDSC genetic correlation results☆56Updated 3 years ago
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆30Updated last week
- Primo☆16Updated 4 years ago
- Software for estimating correlation of trait effect sizes across populations☆50Updated 5 months ago
- ☆19Updated 3 months ago
- A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.☆31Updated last year
- R script to make Manhattan-style plot for TWAS☆41Updated 4 years ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆42Updated 7 years ago
- ☆37Updated 4 years ago
- Cross-population fine-mapping☆39Updated 11 months ago
- ☆16Updated 4 years ago
- GENI plots to visualise results from genome-wide association studies☆30Updated last year
- causal TWAS (cTWAS)☆47Updated this week
- A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.☆51Updated 8 months ago
- Mediated Expression Score Regression (MESC)☆26Updated 2 weeks ago
- ☆50Updated this week
- ☆24Updated 4 years ago