broadinstitute / gnomad_methodsLinks
Hail helper functions for the gnomAD project and Translational Genomics Group
☆97Updated this week
Alternatives and similar repositories for gnomad_methods
Users that are interested in gnomad_methods are comparing it to the libraries listed below
Sorting:
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆89Updated last month
- ☆185Updated 2 years ago
- Pangolin is a deep-learning method for predicting splice site strengths.☆82Updated last year
- MOsaic CHromosomal Alterations (MoChA) caller☆89Updated 3 months ago
- Analysis pipeline for the GUIDE-seq assay.☆80Updated 2 years ago
- Annotates variants in MAF with OncoKB annotation.☆136Updated 4 months ago
- CrossMap is a python program to lift over genome coordinates from one genome version to another.☆89Updated last month
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆50Updated 2 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆98Updated 4 years ago
- A Python package for pharmacogenomics (PGx) research☆81Updated 3 weeks ago
- A Python-based EGA download client☆108Updated last year
- Copy number calling and variant classification using targeted short read sequencing☆140Updated 3 months ago
- Workflows for converting between sequence data formats☆39Updated 4 years ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated 2 weeks ago
- ☆68Updated this week
- A tool for bigWig files.☆118Updated 7 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆148Updated 3 months ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆81Updated 6 months ago
- Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders☆157Updated 3 weeks ago
- Tools to work with GWAS-VCF summary statistics files☆126Updated 3 months ago
- liftover for python, made fast with cython☆93Updated last month
- Microsatellite instability (MSI) detection for tumor only data.☆112Updated last year
- Assignment of known mutational signatures to individual samples and individual somatic mutations☆69Updated last week
- Documentation and description of AWS iGenomes S3 resource.☆118Updated last year
- TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…☆107Updated 3 weeks ago
- Collection of analysis tools for quantitative trait loci☆61Updated last month
- Relevant papers for CNV and SV approaches☆94Updated last year
- Characterization of Germline variants☆98Updated 3 years ago
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆56Updated 2 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆82Updated 4 years ago