This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3
☆14Mar 14, 2019Updated 7 years ago
Alternatives and similar repositories for Manhattan-Plotter
Users that are interested in Manhattan-Plotter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Sep 7, 2022Updated 4 years ago
- ☆12Jun 16, 2023Updated 3 years ago
- A Snakemake pipeline for Quality Control of Whole Genome Sequencing data☆14Jan 18, 2022Updated 4 years ago
- GWAS QC, PCA, haplotype phasing, genotype imputation☆21Mar 31, 2026Updated 6 months ago
- SCALLOP-INF analysis☆21Jul 7, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Analysis pipelines for QTL discovery and GWAS signals interpretation☆13Sep 3, 2024Updated 2 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- Fast manhattenplots using ggplot2☆14Apr 24, 2026Updated 5 months ago
- Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis☆18Mar 18, 2025Updated last year
- A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies☆15Sep 7, 2026Updated last month
- A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient☆20Updated this week
- GWAS SNP Regulatory Analysis Tool☆17Mar 19, 2015Updated 11 years ago
- ☆20Oct 4, 2023Updated 3 years ago
- Example for TWAS☆12Jan 23, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- This is a general (somewhat comprehensive) description of the LNG GWAS pipeline which can be used to guide researchers on how-to run a GW…☆43May 18, 2022Updated 4 years ago
- A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.☆18Oct 2, 2026Updated last week
- A public repo to share methylation risk scores (MRS) derived from UCLA's electronic health records.☆11Aug 25, 2022Updated 4 years ago
- https://filippob.github.io/introduction_to_gwas/☆23Jun 8, 2026Updated 4 months ago
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆54Feb 1, 2019Updated 7 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- Fine-mapping with infinitesimal effects☆20May 5, 2026Updated 5 months ago
- A graduate-level elective course: Python Programming for Life Science Students☆10Mar 26, 2026Updated 6 months ago
- ☆10Feb 25, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- R package 📦 for handy functions when working with GWAS (summary) data☆17Jul 29, 2019Updated 7 years ago
- ☆11Dec 20, 2024Updated last year
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆22Aug 19, 2025Updated last year
- S-LDSC scripts for use on MR server.☆10Sep 23, 2021Updated 5 years ago
- ☆21Nov 15, 2024Updated last year
- Create LocusZoom-style plots in R.☆22Mar 5, 2023Updated 3 years ago
- Repository☆10Oct 23, 2024Updated last year
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 5 years ago
- From QC to summary statistics☆17Jun 27, 2020Updated 6 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Python script for multivariate GWAS meta-analysis☆25Dec 6, 2024Updated last year
- An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictog…☆13Oct 1, 2026Updated last week
- ☆10Apr 10, 2016Updated 10 years ago
- A R tool to parse and visualize chloroplast genomes☆12Dec 1, 2021Updated 4 years ago
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)