mantis-ml: Stochastic semi-supervised learning to prioritise genes from high throughput genomic screens
☆30Jan 26, 2024Updated 2 years ago
Alternatives and similar repositories for mantis-ml-release
Users that are interested in mantis-ml-release are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆25Jan 8, 2025Updated last year
- NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity☆12Feb 25, 2026Updated 2 months ago
- Sample Contamination Estimate from VCF☆20Nov 6, 2024Updated last year
- Building the constrained coding regions (CCR) model☆16Dec 19, 2018Updated 7 years ago
- Fast and scalable variant annotation tool☆30May 1, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆19Sep 14, 2024Updated last year
- VPOT - Variant Prioritisation Ordering Tool. VPOT is a Python tool written to allow prioritisation of variants in ANNOVAR annotated VCF f…☆19Oct 27, 2021Updated 4 years ago
- ☆19Jul 6, 2023Updated 2 years ago
- ☆24Jun 30, 2023Updated 2 years ago
- ☆22Aug 8, 2022Updated 3 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆29Aug 21, 2018Updated 7 years ago
- ☆16Apr 10, 2024Updated 2 years ago
- A flexible tool for meta-analysis☆10Jul 31, 2024Updated last year
- Composite of Multiple Signals: tests for selection in meiotically recombinant populations☆14Jul 4, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆53Jul 9, 2025Updated 9 months ago
- Tip and tricks for VCF files☆21Sep 26, 2018Updated 7 years ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆18Mar 20, 2023Updated 3 years ago
- Analyses conducting GWAS across the UKBB diverse superpopulations☆65Oct 22, 2025Updated 6 months ago
- An statistical approach leveraging segments of distinct ancestries within individuals to estimate similarity in underlying causal effect …☆13Sep 27, 2024Updated last year
- This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3☆13Mar 14, 2019Updated 7 years ago
- Blue Collar Bioinformatics website☆10Apr 30, 2024Updated 2 years ago
- ☆13Feb 2, 2023Updated 3 years ago
- Fork of ricopili for development of pipeline for family-based data☆20Jun 22, 2025Updated 10 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- [DEPRECATED] An R package to pre-process bulk EKG data and detect the physiological peaks☆12Aug 22, 2016Updated 9 years ago
- ☆44Apr 27, 2026Updated last week
- Gaussian imputation of GWAS summary statistics☆15Apr 16, 2015Updated 11 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Mar 25, 2022Updated 4 years ago
- A GPU version of SAIGE for full GRM GWAS analysis☆20Aug 6, 2025Updated 9 months ago
- Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337☆18Aug 30, 2024Updated last year
- A package to perform Random Walk with Restart on different types of networks☆23May 2, 2023Updated 3 years ago
- ☆18Apr 4, 2025Updated last year
- MILTON: Disease prediction with biomarkers and augmented PheWAS analyses☆44Sep 20, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Data and code for the Effector index☆14Oct 13, 2020Updated 5 years ago
- Claude Code plugin that offloads large outputs to filesystem and retrieves when required.☆38Jan 23, 2026Updated 3 months ago
- ☆38Jan 20, 2021Updated 5 years ago
- A variant caller for the GBA gene using WGS data☆23Jul 31, 2024Updated last year
- Estimate genetic correlation using predicted expression☆25Mar 8, 2018Updated 8 years ago
- Predict the functional consequences of both coding and non-coding single nucleotide variants (SNVs)☆19Mar 18, 2021Updated 5 years ago
- Scripts used for generating Neale Lab UKB results☆20Oct 11, 2022Updated 3 years ago