nf-core / phaseimputeLinks
A bioinformatics pipeline to phase and impute genetic data
☆26Updated this week
Alternatives and similar repositories for phaseimpute
Users that are interested in phaseimpute are comparing it to the libraries listed below
Sorting:
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆39Updated last week
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆38Updated 7 months ago
- Set of tools to manipulate and visualize modified base bam files☆58Updated 3 years ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆51Updated 9 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆34Updated 2 years ago
- Structural Variant Index☆75Updated 11 months ago
- Efficient merging of structural variants from multiple SV callers and samples☆31Updated 2 weeks ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆65Updated last month
- ☆26Updated 3 months ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆39Updated last week
- Structural variant (SV) analysis tools☆39Updated last year
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆36Updated last week
- Easy genomic regions for short-read variant calling☆45Updated 3 months ago
- python plotly Circos from VCF☆40Updated last year
- WDL workflows for variant calling and assembly using ONT☆38Updated 2 months ago
- ☆44Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- A local-haplotagging-based small and structural variant caller☆89Updated 2 weeks ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆45Updated last week
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆37Updated 4 months ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated 2 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated this week
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆69Updated this week
- Copy number caller for long read data including SNV utilization☆68Updated 8 months ago
- Variant Interpretation Pipeline☆45Updated this week
- Params validation plugin for Nextflow pipelines☆48Updated last year
- vcfdist: Accurately benchmarking phased variant calls☆84Updated 2 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- TIDDIT - structural variant calling☆77Updated 8 months ago