Alternatives and similar repositories for phaseimpute:

Users that are interested in phaseimpute are comparing it to the libraries listed below

• nf-core / variantbenchmarking
  Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
  ☆28Updated last week
• HudsonAlpha / CSL_public_benchmark
  Location of public benchmarking; primarily final results
  ☆18Updated 2 months ago
• nygenome / Lancet2
  v2.x of the microassembly based somatic variant caller
  ☆20Updated 3 weeks ago
• mgaleyuw / MeOW
  Automated Detection and Qualification of Differential Methylation
  ☆13Updated last year
• rdemolgen / SavvySuite
  Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes
  ☆28Updated 9 months ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆26Updated 2 weeks ago
• fakedrtom / SVAFotate
  ☆39Updated 7 months ago
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆35Updated last month
• genepi / haplocheck
  Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies
  ☆18Updated last year
• brwnj / covviz
  Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata
  ☆56Updated 3 years ago
• jbelyeu / SV-plaudit
  Pipeline for structural variant image curation and analysis.
  ☆48Updated 3 years ago
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆36Updated 9 months ago
• KolmogorovLab / minda
  ☆16Updated last week
• cortes-ciriano-lab / ReConPlot
  ☆22Updated 4 months ago
• genomic-medicine-sweden / nallo
  An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.
  ☆26Updated last week
• Illumina / witty.er
  What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.
  ☆32Updated last year
• SexChrLab / XYalign
  ☆23Updated 5 years ago
• nf-core / vscode-extensionpack
  A VSCode extension pack for nf-core developers.
  ☆15Updated last month
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆65Updated 3 weeks ago
• genepi / cloudgene3
  A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.
  ☆16Updated last week
• alisi1989 / RFMIX2-Pipeline-to-plot
  Here we present a method to plot the outputs of RFMIX version 2
  ☆23Updated 8 months ago
• derijkp / scywalker
  A program for the analysis of single cell nanopore long read data
  ☆18Updated last month
• vpc-ccg / svict
  Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA
  ☆27Updated 10 months ago
• Illumina / Gauchian
  A variant caller for the GBA gene using WGS data
  ☆21Updated 8 months ago
• DecodeGenetics / popSTR
  PopSTR - A Population based microsatellite genotyper
  ☆32Updated last year
• asntech / QDNAseq.hg38
  QDNAseq bin annotation for hg38
  ☆14Updated 3 weeks ago
• zeeev / mergeSVcallers
  heuristics to merge structural variant calls in VCF format.
  ☆36Updated 8 years ago
• dermasugita / Viola-SV
  Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.
  ☆26Updated 9 months ago
• tf2 / CNest
  Copy Number Methods for Detection and Genome Wide Association Tests
  ☆22Updated 5 months ago
• kcleal / SV_Benchmark_CMRG_GIAB
  Structural variant benchmark
  ☆17Updated last month