nf-core / phaseimpute
A bioinformatics pipeline to phase and impute genetic data
☆19Updated 3 weeks ago
Alternatives and similar repositories for phaseimpute:
Users that are interested in phaseimpute are comparing it to the libraries listed below
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆22Updated this week
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆18Updated last year
- ☆39Updated 6 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Population-wide Deletion Calling☆35Updated 6 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated last week
- python plotly Circos from VCF☆34Updated 9 months ago
- ☆21Updated 3 months ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Automated Detection and Qualification of Differential Methylation☆12Updated last year
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆36Updated 9 months ago
- Structural variant (SV) analysis tools☆35Updated 8 months ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆28Updated 8 months ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.☆16Updated last month
- Structural Variant Prediction Viewer☆34Updated 7 years ago
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- Third-generation fusion gene detection☆14Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆64Updated last month
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆26Updated this week
- Structural variant merging tool☆49Updated 7 months ago
- Location of public benchmarking; primarily final results☆18Updated last month
- Immuological gene typing and annotation for genome assembly☆35Updated 2 weeks ago
- Structural variant VCF annotation, duplicate removal and comparison☆31Updated last month
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆39Updated last week
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- ☆29Updated 2 years ago