Alternatives and similar repositories for phaseimpute

Users that are interested in phaseimpute are comparing it to the libraries listed below

• genomic-medicine-sweden / nallo
  An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.
  ☆42Updated this week
• bioinfo-chru-strasbourg / vcf2circos
  python plotly Circos from VCF
  ☆40Updated last year
• fakedrtom / SVAFotate
  ☆44Updated last year
• 1kg-ont-vienna / sv-analysis
  SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel
  ☆38Updated 9 months ago
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆59Updated 3 years ago
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆69Updated 2 months ago
• fritzsedlazeck / Spectre
  Copy number caller for long read data including SNV utilization
  ☆68Updated 10 months ago
• ylab-hi / OctopuSV
  Efficient merging of structural variants from multiple SV callers and samples
  ☆32Updated this week
• ryanlayer / stix
  Structural Variant Index
  ☆75Updated last year
• nf-core / variantbenchmarking
  Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
  ☆38Updated 2 weeks ago
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆38Updated this week
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆95Updated 9 months ago
• huangnengCSU / longcallR
  LongcallR is a SNP caller for single molecule long-read RNA-seq data
  ☆72Updated last month
• alisi1989 / RFMIX2-Pipeline-to-plot
  Here we present a method to plot the outputs of RFMIX version 2
  ☆31Updated last year
• PacificBiosciences / sawfish
  Joint structural variant and copy number variant caller for HiFi sequencing data
  ☆69Updated 3 months ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated 2 years ago
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆40Updated last year
• monarch-initiative / SvAnna
  Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing
  ☆39Updated 2 months ago
• treangenlab / methphaser
  MethPhaser: methylation-based haplotype phasing of human genomes
  ☆52Updated 11 months ago
• epi2me-labs / modbam2bed
  ☆52Updated 4 months ago
• MeHelmy / princess
  ☆84Updated 11 months ago
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆94Updated 3 weeks ago
• lh3 / ref-gen
  Human reference genome analysis sets
  ☆58Updated 2 years ago
• PacificBiosciences / pb-human-wgs-workflow-snakemake
  DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads
  ☆39Updated 2 years ago
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆115Updated last week
• fritzsedlazeck / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆48Updated 5 years ago
• lh3 / longdust
  Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome
  ☆86Updated last week
• SciLifeLab / TIDDIT
  TIDDIT - structural variant calling
  ☆78Updated 2 months ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆121Updated 4 months ago
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆84Updated 4 months ago