A bioinformatics pipeline to phase and impute genetic data
☆30Mar 31, 2026Updated last week
Alternatives and similar repositories for phaseimpute
Users that are interested in phaseimpute are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆53Jul 9, 2025Updated 9 months ago
- ☆18Mar 21, 2023Updated 3 years ago
- nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.☆12Nov 20, 2025Updated 4 months ago
- A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.☆17Sep 6, 2025Updated 7 months ago
- Cancer Predisposition Sequencing Reporter (CPSR)☆63Apr 1, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆13Feb 11, 2026Updated last month
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆13Jun 3, 2025Updated 10 months ago
- Toolkit for calling structural variants using short or long reads☆115Mar 7, 2026Updated last month
- Compare the quality of multiple genomes, along with their annotations.☆20Mar 24, 2026Updated 2 weeks ago
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Mar 30, 2026Updated last week
- Low Coverage Calling of Genotypes☆166Updated this week
- Applying polygenic scores (PGS) on imputed genotypes☆33Oct 28, 2025Updated 5 months ago
- Notes on SNP-related tools and genome variation analysis☆28Aug 30, 2025Updated 7 months ago
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆17Jun 1, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Large scale ancestry inference from PCA data☆23May 2, 2023Updated 2 years ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Feb 12, 2020Updated 6 years ago
- Segmented HAPlotype Estimation and Imputation Tool☆98Dec 5, 2025Updated 4 months ago
- Surveillance of pathogens using population genomics and sequencing☆59Feb 13, 2026Updated last month
- A nextflow pipeline for calling exome CNVs☆13Feb 24, 2026Updated last month
- Repository☆10Oct 23, 2024Updated last year
- The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation☆162Dec 11, 2025Updated 3 months ago
- Tumor-normal variant calling workflow using HiFi reads☆29Mar 4, 2026Updated last month
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆30Aug 26, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Here we present a method to plot the outputs of RFMIX version 2☆31Aug 14, 2024Updated last year
- Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-C…☆30Jan 5, 2026Updated 3 months ago
- Teaching modules for Human Genome Variation Lab.☆21Jun 6, 2025Updated 10 months ago
- A nf-core pipeline for untargeted whole genome reconstruction with iSNV detection from metagenomic samples.☆32Apr 1, 2026Updated last week
- Precision HLA typing from next-generation sequencing data☆79Apr 2, 2026Updated last week
- The flare program performs local ancestry inference☆46Nov 4, 2025Updated 5 months ago
- GWAS and rare variants tests at high speed using regenie☆16Feb 18, 2026Updated last month
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆24Nov 20, 2025Updated 4 months ago
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆13Apr 2, 2026Updated last week
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis☆11May 9, 2024Updated last year
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆25Aug 30, 2024Updated last year
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆91Jan 28, 2026Updated 2 months ago
- Copy Number Methods for Detection and Genome Wide Association Tests☆22Nov 4, 2024Updated last year
- R package for working in the UK Biobank Research Analysis Platform (RAP)☆84Mar 13, 2026Updated 3 weeks ago
- A Nextflow pipeline to play Doom☆10Dec 1, 2025Updated 4 months ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆81Oct 7, 2025Updated 6 months ago