Alternatives and similar repositories for Network_Evaluation_Tools

Users that are interested in Network_Evaluation_Tools are comparing it to the libraries listed below

• AltschulerWu-Lab / scScope
  ☆48Updated 6 years ago
• wagnerde / STITCH
  Assembles a graph manifold from time series single-cell RNAseq data
  ☆17Updated 4 years ago
• yunchuankong / GEDFN
  GEDFN: Graph-Embedded Deep Feedforward Network
  ☆23Updated 6 years ago
• cstoeckert / iterativeWGCNA
  Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.
  ☆64Updated 4 years ago
• ushaham / BatchEffectRemoval
  ☆55Updated 5 years ago
• raphael-group / hierarchical-hotnet
  Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.
  ☆38Updated 5 years ago
• wang-research / VASC
  Variational autoencoder for single cell RNA-seq datasets
  ☆44Updated 7 years ago
• CancerRxGene / gdsctools
  Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
  ☆36Updated 3 years ago
• Tchanders / network_inference_tutorials
  ☆31Updated 6 years ago
• greenelab / multi-plier
  An unsupervised transfer learning approach for rare disease transcriptomics
  ☆45Updated 5 years ago
• cmap / cmapM
  Connectivity Map analysis in MATLAB
  ☆46Updated 3 years ago
• kckishan / GNE
  This repository contains the tensorflow implementation of "GNE: A deep learning framework for gene network inference by aggregating biolo…
  ☆31Updated 4 years ago
• idekerlab / pyNBS
  Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)
  ☆37Updated 8 months ago
• kundajelab / coda
  Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data
  ☆33Updated 7 years ago
• alberto-valdeolivas / RandomWalkRestartMH
  A package to perform Random Walk with Restart on different types of networks
  ☆22Updated 2 years ago
• cole-trapnell-lab / sci-plex
  repository containing analysis scripts and auxiliary files
  ☆34Updated 5 years ago
• TranslationalBioinformaticsUnit / singlecelldb
  An actionable database of publicly available single-cell RNA-seq data
  ☆41Updated 6 years ago
• jw156605 / MATCHER
  MATCHER (Manifold Alignment to Characterize Experimental Relationships) is an approach for integrating single cell transcriptomic and epi…
  ☆21Updated 8 years ago
• uci-cbcl / FactorNet
  A deep learning package for predicting TF binding
  ☆42Updated 5 years ago
• bioFAM / slalom
  ☆29Updated 2 years ago
• saeyslab / moduledetection-evaluation
  ☆32Updated 3 years ago
• xiaoyeye / CNNC
  covolutional neural network based coexpression analysis
  ☆78Updated 5 years ago
• greenelab / RNAseq_titration_results
  Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously
  ☆36Updated 2 years ago
• raphael-group / hotnet2
  HotNet2 is an algorithm for finding significantly altered subnetworks in a large gene interaction network
  ☆102Updated 6 years ago
• CancerRxGene / gdscIC50
  An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.
  ☆26Updated last year
• wys8c764 / CSN
  Cell-specific Network Constructed by Single-cell RNA Sequencing Data
  ☆21Updated 6 years ago
• davidbuterez / CellVGAE
  An unsupervised scRNA-seq analysis workflow with graph attention networks
  ☆26Updated 2 years ago
• gagneurlab / concise
  Concise: Keras extension for regulatory genomics
  ☆35Updated 2 years ago
• xypan1232 / iDeep
  iDeep: integrated prediction of RNA-protein binding sites using deep learning
  ☆39Updated 4 years ago
• lanagarmire / deepimpute
  An accurate and efficient deep learning method for single-cell RNA-seq data imputation
  ☆89Updated 3 years ago