idekerlab / Network_Evaluation_Tools
Python 2.7 package with examples for evaluating a network's ability to group a given node set in network proximity.
☆32Updated last year
Alternatives and similar repositories for Network_Evaluation_Tools:
Users that are interested in Network_Evaluation_Tools are comparing it to the libraries listed below
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆61Updated 3 years ago
- ☆49Updated 5 years ago
- ☆55Updated 4 years ago
- Connectivity Map analysis in MATLAB☆42Updated 3 years ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago
- A package to perform Random Walk with Restart on different types of networks☆20Updated last year
- Assembles a graph manifold from time series single-cell RNAseq data☆17Updated 3 years ago
- GEDFN: Graph-Embedded Deep Feedforward Network☆23Updated 5 years ago
- ☆31Updated 5 years ago
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆50Updated 4 years ago
- repository containing analysis scripts and auxiliary files☆33Updated 4 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆35Updated 3 years ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆49Updated 3 years ago
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.☆36Updated 5 years ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 5 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- Bootstrap imputation for scRNAseq data☆12Updated 4 years ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆33Updated 7 years ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆53Updated 2 years ago
- An actionable database of publicly available single-cell RNA-seq data☆41Updated 5 years ago
- Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)☆38Updated 4 months ago
- ☆25Updated 5 years ago
- ☆26Updated last year
- This repository contains the tensorflow implementation of "GNE: A deep learning framework for gene network inference by aggregating biolo…☆31Updated 4 years ago
- Data and analysis for the Splatter paper☆28Updated 7 years ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆45Updated 5 years ago
- scRNAseq integration with triplet neural networks☆40Updated 2 years ago
- This is the public repository for the EPIC tool.☆17Updated 2 years ago
- A deep learning package for predicting TF binding☆42Updated 5 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆74Updated last year