jakelever / cancermine
Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer
☆41Updated last year
Alternatives and similar repositories for cancermine:
Users that are interested in cancermine are comparing it to the libraries listed below
- ☆16Updated last year
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- Code for classifying unstructured text to tissue ontology terms using natural language processing and machine learning.☆23Updated 6 months ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆35Updated 3 years ago
- Explore the cancer relevance of your gene list☆49Updated 5 months ago
- A Python package for benchmarking pathway database with functional enrichment and classification methods☆13Updated 3 years ago
- Code to run OncoSig Analyses☆18Updated 4 years ago
- A metadata commons to store research software metadata☆40Updated this week
- Repo for downloading and storing OMIM data☆18Updated 8 years ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆25Updated last year
- Proteome-Wide Association Study☆44Updated 3 years ago
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.☆36Updated 5 years ago
- A phenotype-based tool for variant prioritization in WES and WGS data☆37Updated 2 years ago
- This is the public repository for the EPIC tool.☆17Updated 2 years ago
- ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data☆21Updated 9 months ago
- A combined deep learning tool for automated recognition of human phenotype ontology☆23Updated 2 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆24Updated 6 months ago
- An automated pipe for reproducible RNA-seq analysis with the minimal efforts from researchers. You only need to provide the taxa name and…☆13Updated 2 years ago
- An interactive learning resource for next-generation sequencing (NGS) techniques☆28Updated 6 years ago
- mantis-ml: Stochastic semi-supervised learning to prioritise genes from high throughput genomic screens☆28Updated last year
- Interpretation of RNAseq experiments through robust, efficient comparison to public databases☆16Updated 3 months ago
- Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing☆32Updated 7 years ago
- Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap☆16Updated 4 years ago
- Standalone shiny server container for viewing CellChat object☆12Updated 4 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆48Updated 5 years ago
- 🏺 Exploring novel tumor epitope identification☆35Updated 4 years ago
- Target prioritization using network representation learning☆11Updated 3 years ago
- Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously☆35Updated last year
- ☆12Updated 5 months ago
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆18Updated last week