jakelever / cancermineLinks
Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer
☆41Updated 2 years ago
Alternatives and similar repositories for cancermine
Users that are interested in cancermine are comparing it to the libraries listed below
Sorting:
- Explore the cancer relevance of your gene list☆52Updated last week
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- Interpretation of RNAseq experiments through robust, efficient comparison to public databases☆16Updated last month
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆28Updated 2 years ago
- Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously☆37Updated 2 years ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆54Updated last year
- An open, collaborative project to analyze data from the Single-cell Pediatric Cancer Atlas (ScPCA) Portal☆14Updated last week
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆66Updated 4 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 3 years ago
- An automated pipe for reproducible RNA-seq analysis with the minimal efforts from researchers. You only need to provide the taxa name and…☆14Updated 3 years ago
- A Python package for benchmarking pathway database with functional enrichment and classification methods☆13Updated 4 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆29Updated 2 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- Accessing AlphaMissense Data Resources in R☆11Updated 2 weeks ago
- A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries☆12Updated 5 years ago
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.☆38Updated 6 years ago
- GEO RNA-seq Experiments Processing Pipeline☆22Updated 6 years ago
- A Python package for gene network analysis☆32Updated 3 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆27Updated last year
- Search across publicly available datasets to find instances where a drug or cell line of interest has been profiled.☆46Updated 7 years ago
- R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)☆24Updated 6 months ago
- Modeling of time series data for CRISPR KO experiments☆37Updated 3 weeks ago
- Code to run OncoSig Analyses☆18Updated 5 years ago
- Overview of GDC Harmonization Workflows☆33Updated 2 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆24Updated 6 years ago
- Explore and download data from the recount3 project☆37Updated 2 months ago
- Code associated with MIX-seq manuscript☆15Updated 5 years ago
- ARCHS4 RNA-seq processing scripts and web server pages.☆61Updated 5 years ago
- rbioapi: User-Friendly R Interface to Biologic Web Services' API☆22Updated last month
- A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆26Updated last year