Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer
☆42Oct 23, 2026Updated 2 weeks ago
Alternatives and similar repositories for cancermine
Users that are interested in cancermine are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!☆15Oct 5, 2026Updated last month
- A framework for keeping biomedical text mining result up-to-date☆43Jul 11, 2020Updated 6 years ago
- A python interface for the CIViC db application☆13Oct 5, 2026Updated last month
- CLI to automate Nextflow pipeline testing☆13Dec 15, 2025Updated 10 months ago
- python module for querying the vicc knowledgebase integration datastore☆11Jul 6, 2023Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A Java package for non-invasive cancer diagnosis using methylation profiles of cell-Free DNA.☆17Apr 2, 2019Updated 7 years ago
- ☆13Nov 15, 2018Updated 7 years ago
- Biomedical wordlists (of drugs, genes, etc) for several text mining projects☆19Oct 23, 2026Updated 2 weeks ago
- Interactive visulizations for track-based genomic data in R☆15Sep 9, 2024Updated 2 years ago
- ☆15Nov 19, 2018Updated 7 years ago
- mSINGS: Detecting Microsatellite Instability By Next-Generation Sequencing This project provides a program with a command-line interfa…☆11Jun 6, 2023Updated 3 years ago
- PhenoTagger☆67Jan 24, 2024Updated 2 years ago
- ☆23Sep 4, 2018Updated 8 years ago
- ☆17Sep 30, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Terraform template to create AWS resources to execute jobs using nextflow☆22Mar 1, 2023Updated 3 years ago
- ☆13Sep 2, 2024Updated 2 years ago
- Code used for mouse single cell RNAseq testis atlas☆12Nov 28, 2020Updated 5 years ago
- Genomics Platform Group Reporter☆10Oct 16, 2026Updated 3 weeks ago
- Curated list of resources for variant prioritization☆16Nov 18, 2025Updated 11 months ago
- Mutational signature analysis for low statistics SNV data☆67Aug 7, 2024Updated 2 years ago
- Toolkit for benchmarking fusion transcript predictions☆19Dec 24, 2025Updated 10 months ago
- A computational workflow for exitron splicing identification☆16Jul 17, 2026Updated 3 months ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A suite for the analysis of CLIP-Seq datasets.☆12Jan 31, 2022Updated 4 years ago
- annotation database for human genetics, genomics and epigenomics☆21Jun 1, 2026Updated 5 months ago
- CNV Rapid Aberration Detection And Reporting☆13Mar 2, 2021Updated 5 years ago
- Targeted and non-targeted anticancer drugs and drug regimens☆31Updated this week
- Compute a 2D embedding of a data matrix given supervised class information.☆12Dec 8, 2019Updated 6 years ago
- Training and testing of DeepSEA models.☆16Oct 19, 2015Updated 11 years ago
- Build SVG Custom User Interface in R, rmd, qmd and Shiny☆20Oct 3, 2026Updated last month
- ☆21Jun 5, 2017Updated 9 years ago
- An R meta-package for the analysis of Next Generation Sequencing data☆31Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Nextflow pipeline for Mutect2 somatic variant calling best practices☆24Jun 14, 2024Updated 2 years ago
- Protocol of the analysis of iTRAQ/TMT proteomics data including quantification, statistical analysis and maybe clustering☆12May 4, 2019Updated 7 years ago
- Single Cell RNA-seq UMI Filtering Facilitator☆10Oct 6, 2025Updated last year
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆50Sep 2, 2026Updated 2 months ago
- ☆10Jan 25, 2019Updated 7 years ago
- ☆11Jan 7, 2020Updated 6 years ago
- ☆22Sep 4, 2020Updated 6 years ago