Alternatives and similar repositories for covid_balf

Users that are interested in covid_balf are comparing it to the libraries listed below

• bei-lab / scRNA-AHCA

  View on GitHub
  Single-cell transcriptome profiling of an adult human cell atlas of 15 major organs
  ☆39Jan 14, 2024Updated 2 years ago
• greenelab / gbm_immune_validation

  View on GitHub
  Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors
  ☆14Jul 10, 2019Updated 6 years ago
• lfranzen / spatial-lung-fibrosis

  View on GitHub
  Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…
  ☆31Jul 13, 2024Updated last year
• XSLiuLab / tumor-immunogenicity-score

  View on GitHub
  TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020
  ☆33Sep 16, 2021Updated 4 years ago
• reyes-m / sepsis_signature

  View on GitHub
  ☆12Mar 2, 2020Updated 5 years ago
• asrhou / NATMI

  View on GitHub
  NATMI: Network Analysis Toolkit for the Multicellular Interactions
  ☆17Dec 19, 2024Updated last year
• WXlab-NJMU / scrna-recom

  View on GitHub
  collected resource for scRNA-seq analysis
  ☆67Jul 19, 2023Updated 2 years ago
• LungCellAtlas / HLCA_reproducibility

  View on GitHub
  This repository contains all code used for the Human Lung Cell Atlas project.
  ☆58Aug 21, 2023Updated 2 years ago
• OmicsAcademy / bioinf2019

  View on GitHub
  ☆29Apr 20, 2019Updated 6 years ago
• ajwilk / 2020_Wilk_COVID

  View on GitHub
  Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…
  ☆49Oct 22, 2021Updated 4 years ago
• lessonskit / Single-cell-RNA-sequencing-of-human-kidney

  View on GitHub
  R-code used for single-cell RNA-Seq analysis of kidney data.
  ☆18Oct 17, 2019Updated 6 years ago
• Japrin / STARTRAC

  View on GitHub
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆116Apr 26, 2025Updated 9 months ago
• effiken / martin_et_al_cell_2019

  View on GitHub
  Scripts and data files used to generate the figures of the Crohn's single-cell RNA-seq paper "Single-cell analysis of Crohn’s disease les…
  ☆19Aug 29, 2019Updated 6 years ago
• ncborcherding / ccRCC

  View on GitHub
  Single-Cell Analysis of Immune Cells from Renal Clear Cell Carcinoma
  ☆21Aug 15, 2021Updated 4 years ago
• PierreBSC / Viral-Track

  View on GitHub
  ☆63Aug 14, 2020Updated 5 years ago
• leeprichman / ClonoCluster

  View on GitHub
  Combined clonality and transcriptome scRNAseq clustering method
  ☆11Dec 3, 2022Updated 3 years ago
• Teichlab / thymus_spatial_atlas

  View on GitHub
  general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!
  ☆12Nov 20, 2024Updated last year
• woolf-wu / GEO

  View on GitHub
  ☆13Mar 17, 2019Updated 6 years ago
• meta-cancer / scPLC

  View on GitHub
  Codes for the scPLC project
  ☆74Dec 2, 2022Updated 3 years ago
• Gibbsdavidl / Immune-Subtype-Clustering

  View on GitHub
  This repo contains the code necessary to reproduce the clusters found in "The Immune Landscape of Cancer".
  ☆18Aug 6, 2019Updated 6 years ago
• SGI-CRC / scRNA-seq

  View on GitHub
  ☆10Sep 26, 2019Updated 6 years ago
• Sidra-TBI-FCO / ISPC

  View on GitHub
  Code for the paper on the ICR immune signatures and prognostic significance pan-cancer (TCGA)
  ☆10Jul 22, 2020Updated 5 years ago
• Coolgenome / GastricCancer

  View on GitHub
  ☆12Mar 5, 2024Updated last year
• alberto-valdeolivas / ST_CRC_CMS

  View on GitHub
  This repository contains the scripts developed for the analysis of CRC samples processed with the 10x VISIUM Spatial Transcriptomics tech…
  ☆11Feb 7, 2023Updated 3 years ago
• yunshun / HumanBreast10X

  View on GitHub
  ☆28Jan 25, 2022Updated 4 years ago
• constantAmateur / scKidneyTumors

  View on GitHub
  Code for "Single cell transcriptomes from human kidneys reveal the cellular identity of renal tumours"
  ☆27Jun 5, 2018Updated 7 years ago
• saezlab / FootprintMethods_on_scRNAseq

  View on GitHub
  Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data
  ☆28Mar 2, 2020Updated 5 years ago
• EDePasquale / DoubletDecon

  View on GitHub
  A tool for removing doublets from single-cell RNA-seq data
  ☆75Dec 2, 2020Updated 5 years ago
• xuefliang / RInMedicine

  View on GitHub
  ☆11Apr 10, 2016Updated 9 years ago
• saeyslab / NicheNet_LiverCellAtlas

  View on GitHub
  Scripts used for the Differential NicheNet analyses in the Liver Atlas paper Guilliams et al., Cell 2022
  ☆10Jan 12, 2022Updated 4 years ago
• BatadaLab / scID

  View on GitHub
  scID
  ☆14Oct 21, 2021Updated 4 years ago
• Sijin-ZhangLab / PanMyeloid

  View on GitHub
  ☆114Sep 16, 2020Updated 5 years ago
• deliberato / Obesity-project

  View on GitHub
  Description of the obesity project done with MIMIC-III database on March 2017.
  ☆12Aug 15, 2019Updated 6 years ago
• Changwuuu / Cuproptosis-pancancer

  View on GitHub
  ☆18Oct 13, 2023Updated 2 years ago
• morris-lab / BiddyetalWorkflow

  View on GitHub
  This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.
  ☆32Jun 24, 2024Updated last year
• rohitarorayyc / SpatialTranscriptomics

  View on GitHub
  Spatial Transcriptomic Analysis of OSCC samples
  ☆28Dec 24, 2025Updated last month
• LTLA / scRNAseq

  View on GitHub
  Clone of the Bioconductor repository for the scRNAseq package.
  ☆29Oct 10, 2025Updated 4 months ago
• sqjin / CellChat

  View on GitHub
  R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
  ☆760Jan 6, 2024Updated 2 years ago
• heyrict / clinical-medicine-notes

  View on GitHub
  Notes in markdown for clinical medicine (mainly in Chinese)
  ☆14Jun 22, 2024Updated last year