Alternatives and similar repositories for SPOT

Users that are interested in SPOT are comparing it to the libraries listed below

• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆61Updated last year
• althonos / peptides.py
  Physicochemical properties, indices and descriptors for amino-acid sequences.
  ☆113Updated 5 months ago
• maovshao / PLMSearch
  PLMSearch enables accurate and fast homologous protein search with only sequences as input
  ☆78Updated 5 months ago
• minmarg / gtalign_alpha
  GTalign, high-performance protein structure alignment, superposition and search
  ☆54Updated 5 months ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆90Updated last year
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆63Updated 10 months ago
• JudeWells / chainsaw
  ☆47Updated last year
• DeepRank / DeepRank-GNN-esm
  Graph Network for protein-protein interface including language model features
  ☆34Updated last year
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆95Updated 2 months ago
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆66Updated last month
• althonos / mini3di
  A NumPy port of the foldseek code for encoding protein structures to 3di.
  ☆79Updated 5 months ago
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆105Updated this week
• PDB-REDO / alphafill
  AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…
  ☆110Updated last week
• steineggerlab / folddisco
  Fast indexing and search of discontinuous motifs in protein structures
  ☆113Updated this week
• steineggerlab / colabfold-protocol
  ColabFold protocol
  ☆56Updated last year
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆57Updated 3 years ago
• tymor22 / tm-vec
  ☆76Updated last year
• fhalab / evSeq
  Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
  ☆34Updated 3 years ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆46Updated 2 years ago
• proteinphysiologylab / frustratometeR
  ☆39Updated 7 months ago
• labstructbioinf / localpdb
  Python package to manage protein structures and their annotations
  ☆45Updated last year
• TattaBio / gLM2
  ☆79Updated last year
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆33Updated 2 years ago
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆50Updated 9 months ago
• jlparkI / AntPack
  Tools for annotation, processing and ML for antibody sequences
  ☆39Updated this week
• Rostlab / EAT
  Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…
  ☆41Updated 5 months ago
• wrf / pdbcolor
  Python code to color a PDB structure based on parameters from a multiple sequence alignment
  ☆33Updated last month
• jcheongs / alphafold-multimer
  ☆33Updated 3 years ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆56Updated 5 months ago
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆27Updated 4 months ago