AlexanderKroll / SPOTLinks
☆12Updated last year
Alternatives and similar repositories for SPOT
Users that are interested in SPOT are comparing it to the libraries listed below
Sorting:
- ☆47Updated last year
- Detection of remote homology by comparison of protein language model representations☆60Updated last year
- Fast protein structure searching or your money back☆118Updated 2 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆58Updated 8 months ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆61Updated 9 months ago
- Graph Network for protein-protein interface including language model features☆34Updated last year
- Evolutionary velocity with protein language models☆95Updated last month
- GTalign, high-performance protein structure alignment, superposition and search☆52Updated 4 months ago
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆77Updated 4 months ago
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆77Updated 4 months ago
- MMseqs2 app to run on your workstation or servers☆101Updated 3 weeks ago
- Fast protein domain structure embedding+search tool☆27Updated 3 months ago
- ☆77Updated last year
- Generator and regressor neural networks for antimicrobial peptides☆25Updated last year
- Fast indexing and search of discontinuous motifs in protein structures☆110Updated this week
- DeepECtransformer☆29Updated 2 years ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆34Updated 4 months ago
- Evolutionary conservation estimation of residues or nucleotides☆56Updated 3 years ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆41Updated 2 years ago
- Python code to color a PDB structure based on parameters from a multiple sequence alignment☆33Updated 2 weeks ago
- Machine learning prediction of enzyme optimum pH☆49Updated 8 months ago
- Physicochemical properties, indices and descriptors for amino-acid sequences.☆111Updated 4 months ago
- Biological prediction models made simple.☆47Updated last month
- A domain parser for Alphafold models☆46Updated 2 years ago
- Fast and accurate protein structure prediction☆56Updated 11 months ago
- PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity☆20Updated 4 months ago
- ☆54Updated 4 months ago
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆109Updated last month
- PLM based active learning model for protein engineering☆84Updated last year